Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OZ656_RS13770 Genome accession   NZ_CP114373
Coordinates   2949585..2950802 (+) Length   405 a.a.
NCBI ID   WP_379944640.1    Uniprot ID   -
Organism   Marinobacter sp. LM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2944585..2955802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ656_RS13745 - 2944710..2944910 (-) 201 WP_379944635.1 BrnT family toxin -
  OZ656_RS13750 (OZ656_13695) - 2944913..2945710 (+) 798 WP_379944636.1 transposase -
  OZ656_RS13755 (OZ656_13700) - 2946069..2946806 (-) 738 WP_379944637.1 hypothetical protein -
  OZ656_RS13760 (OZ656_13705) - 2946896..2947474 (-) 579 WP_379944638.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OZ656_RS13765 (OZ656_13710) pilB 2947864..2949582 (+) 1719 WP_379944639.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OZ656_RS13770 (OZ656_13715) pilC 2949585..2950802 (+) 1218 WP_379944640.1 type II secretion system F family protein Machinery gene
  OZ656_RS13775 (OZ656_13720) pilD 2950886..2951761 (+) 876 WP_379944642.1 prepilin peptidase Machinery gene
  OZ656_RS13780 (OZ656_13725) coaE 2951762..2952379 (+) 618 WP_379944643.1 dephospho-CoA kinase -
  OZ656_RS13785 (OZ656_13730) - 2952468..2953457 (+) 990 WP_379944644.1 hypothetical protein -
  OZ656_RS13790 (OZ656_13735) tsaA 2953466..2954215 (+) 750 WP_114434283.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44403.37 Da        Isoelectric Point: 9.6763

>NTDB_id=765707 OZ656_RS13770 WP_379944640.1 2949585..2950802(+) (pilC) [Marinobacter sp. LM1]
MAEKAQKLEAYVWEGKDRKGNKAKGELAGSNIALVKAQLRKQGIIPDKVKKKPKPLFGGSKKITPFDIAMLTRQLATMMK
AGVPLVQSFDIVADGLENKGLQELVMTIRNDISSGTGFASSLRKHPKYFDDLYCNLVDSGEKAGALEQMLDRIATYLEKT
EILKKKVKKAMTYPIAVIVVAIVVTAILLIKVVPQFESLFQGFGADLPVFTQFIIRISEWLQSWWFIVLLGIVGTIFLFK
ESKRRSQKFSDFVDKYVLKLPIVGEILDKSAVAKFGRVLSTTFAAGVPLVDALDSVAGATGNAVYRDAVMNIKNDVSSGT
QLQASMRQQGVFPVMAVQLTAIGEESGNLDDMLKKVAEHYEGVVDDMVDNLTALMEPMIMAVLGVLVGGLIIGMYLPIFQ
MGQVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=765707 OZ656_RS13770 WP_379944640.1 2949585..2950802(+) (pilC) [Marinobacter sp. LM1]
ATGGCAGAAAAAGCGCAGAAGCTCGAAGCATACGTTTGGGAAGGCAAAGACCGCAAAGGTAATAAAGCCAAAGGGGAGCT
TGCGGGCTCCAATATCGCCTTGGTAAAAGCCCAGTTGCGCAAACAGGGCATTATTCCGGATAAGGTTAAGAAAAAGCCAA
AGCCACTGTTTGGCGGCAGCAAGAAGATCACGCCTTTCGACATCGCAATGCTCACCCGTCAGCTAGCAACCATGATGAAA
GCCGGTGTCCCTCTGGTTCAGAGTTTCGATATCGTTGCCGATGGCCTCGAAAATAAAGGCTTACAGGAACTGGTGATGAC
TATCCGGAACGACATTTCTTCCGGTACCGGGTTCGCATCCTCTCTGCGCAAGCATCCAAAATATTTTGATGATCTTTATT
GCAACCTGGTGGACTCAGGTGAGAAAGCAGGTGCATTGGAACAAATGTTGGATCGTATCGCGACTTACCTTGAGAAAACG
GAGATCCTGAAGAAAAAAGTCAAAAAGGCCATGACTTATCCAATTGCAGTTATCGTTGTCGCGATTGTCGTTACAGCTAT
TCTATTGATCAAGGTGGTTCCTCAGTTTGAAAGTTTGTTCCAAGGCTTTGGGGCGGATCTACCGGTATTCACGCAGTTTA
TTATTCGGATATCCGAATGGCTTCAGTCATGGTGGTTTATTGTTTTGCTTGGAATCGTCGGCACGATTTTTCTTTTCAAA
GAATCGAAGCGAAGGTCCCAGAAATTCTCGGATTTCGTCGATAAATATGTATTGAAGTTGCCGATTGTCGGAGAAATCCT
GGACAAATCTGCTGTAGCTAAATTCGGCCGTGTACTCTCTACCACGTTCGCGGCGGGCGTTCCTCTCGTTGACGCACTGG
ACTCGGTTGCTGGCGCGACGGGCAATGCCGTGTACCGTGACGCTGTCATGAATATCAAAAACGATGTCTCTAGCGGTACC
CAACTGCAGGCCTCTATGCGGCAACAGGGTGTTTTCCCTGTAATGGCTGTTCAACTGACCGCCATCGGCGAGGAGTCGGG
CAATCTGGATGACATGCTGAAAAAAGTCGCAGAACATTATGAAGGTGTCGTCGACGACATGGTTGATAACCTCACAGCCC
TGATGGAGCCCATGATTATGGCCGTACTCGGCGTTCTGGTTGGCGGCCTGATTATCGGCATGTACCTCCCCATCTTCCAG
ATGGGTCAGGTTGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)

Type II secretion system (T2SS), protein F (T2SSF)

(277-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

66.42

100

0.664
  pilC Acinetobacter baumannii D1279779

58.272

100

0.583
  pilC Acinetobacter baylyi ADP1

57.635

100

0.578
  pilC Legionella pneumophila strain ERS1305867

53.202

100

0.533
  pilG Neisseria gonorrhoeae MS11

43.21

100

0.432
  pilG Neisseria meningitidis 44/76-A

42.963

100

0.43
  pilC Vibrio campbellii strain DS40M4

38.916

100

0.39
  pilC Vibrio cholerae strain A1552

39.012

100

0.39
  pilC Thermus thermophilus HB27

36.591

98.519

0.36