Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OZ656_RS13775 Genome accession   NZ_CP114373
Coordinates   2950886..2951761 (+) Length   291 a.a.
NCBI ID   WP_379944642.1    Uniprot ID   -
Organism   Marinobacter sp. LM1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2945886..2956761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZ656_RS13755 (OZ656_13700) - 2946069..2946806 (-) 738 WP_379944637.1 hypothetical protein -
  OZ656_RS13760 (OZ656_13705) - 2946896..2947474 (-) 579 WP_379944638.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OZ656_RS13765 (OZ656_13710) pilB 2947864..2949582 (+) 1719 WP_379944639.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OZ656_RS13770 (OZ656_13715) pilC 2949585..2950802 (+) 1218 WP_379944640.1 type II secretion system F family protein Machinery gene
  OZ656_RS13775 (OZ656_13720) pilD 2950886..2951761 (+) 876 WP_379944642.1 prepilin peptidase Machinery gene
  OZ656_RS13780 (OZ656_13725) coaE 2951762..2952379 (+) 618 WP_379944643.1 dephospho-CoA kinase -
  OZ656_RS13785 (OZ656_13730) - 2952468..2953457 (+) 990 WP_379944644.1 hypothetical protein -
  OZ656_RS13790 (OZ656_13735) tsaA 2953466..2954215 (+) 750 WP_114434283.1 tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO -
  OZ656_RS13795 (OZ656_13740) - 2954260..2956614 (+) 2355 WP_379944645.1 response regulator -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32196.34 Da        Isoelectric Point: 6.6802

>NTDB_id=765708 OZ656_RS13775 WP_379944642.1 2950886..2951761(+) (pilD) [Marinobacter sp. LM1]
MLPLETILSTPWLLYLVVIFVSLCVGSFLNVVILRLPKMMKQEWRCQCEEFLEVPEGDRKSDERTTLSTPASTCPSCGHK
IRAWENIPVISWLMLGGKCSSCKTRISPRYPIIEALTAVFSVVTVYLLGPSETALWALLMVWALVALTMIDFDTQLLPDG
ITLPLMWLGLVLNYFGVLTDFGSAFWGAVAGYLSLWSVYWLFKLATGKEGMGHGDFKLLAALGAWLGWQLLPAVILLSSL
VGAIVGISLMVFRKHGREVPIPFGPYLAAAGLLSLWFGTEIQAIWFGYLGV

Nucleotide


Download         Length: 876 bp        

>NTDB_id=765708 OZ656_RS13775 WP_379944642.1 2950886..2951761(+) (pilD) [Marinobacter sp. LM1]
ATGCTCCCCCTAGAAACCATCCTGTCCACTCCCTGGCTTCTCTATCTGGTCGTCATTTTCGTCTCTCTCTGCGTCGGTAG
TTTTCTGAACGTTGTCATCCTTCGCCTGCCCAAAATGATGAAGCAGGAATGGCGCTGCCAGTGCGAGGAGTTTCTGGAAG
TGCCGGAGGGCGACCGCAAGTCAGATGAGCGGACAACTCTTTCAACGCCGGCCTCCACCTGCCCGTCCTGCGGCCACAAA
ATTCGTGCCTGGGAGAACATTCCGGTCATCAGCTGGCTAATGCTTGGTGGCAAATGCTCTTCGTGCAAAACACGTATTTC
GCCGCGTTACCCCATCATTGAAGCACTGACTGCGGTGTTTTCCGTCGTAACGGTTTATCTGCTGGGGCCATCTGAGACCG
CGCTCTGGGCACTGCTGATGGTCTGGGCTCTGGTGGCGCTGACCATGATCGATTTCGACACACAACTCCTGCCAGACGGC
ATCACCCTGCCCCTGATGTGGCTTGGCCTGGTGCTTAACTACTTTGGTGTGCTGACGGATTTTGGCAGCGCTTTCTGGGG
CGCTGTGGCAGGTTACCTCTCGCTCTGGAGCGTGTACTGGTTGTTCAAACTGGCCACCGGCAAGGAAGGCATGGGGCACG
GTGACTTCAAGCTGTTAGCGGCGCTGGGGGCCTGGCTGGGCTGGCAACTGCTGCCTGCGGTGATTCTGCTCTCCTCTCTG
GTGGGCGCGATAGTGGGCATCAGTCTGATGGTATTCCGCAAACACGGGCGTGAAGTGCCGATTCCTTTCGGCCCTTACCT
GGCCGCTGCAGGCTTACTCTCGTTGTGGTTTGGGACTGAAATCCAGGCCATATGGTTCGGGTACCTAGGAGTCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

55.109

94.158

0.519
  pilD Acinetobacter nosocomialis M2

54.38

94.158

0.512
  pilD Vibrio campbellii strain DS40M4

52.281

97.938

0.512
  pilD Vibrio cholerae strain A1552

52.143

96.22

0.502
  pilD Neisseria gonorrhoeae MS11

50.201

85.567

0.43