Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   O2T11_RS13095 Genome accession   NZ_CP114186
Coordinates   2757949..2759172 (+) Length   407 a.a.
NCBI ID   WP_064490250.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain PH1273     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2752949..2764172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O2T11_RS13075 (O2T11_13075) ampD 2753972..2754523 (-) 552 WP_005462574.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  O2T11_RS13080 (O2T11_13080) nadC 2754616..2755503 (+) 888 WP_015297249.1 carboxylating nicotinate-nucleotide diphosphorylase -
  O2T11_RS13085 (O2T11_13085) pilA 2755768..2756232 (+) 465 WP_031857216.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  O2T11_RS13090 (O2T11_13090) pilB 2756236..2757924 (+) 1689 WP_283658206.1 type IV-A pilus assembly ATPase PilB Machinery gene
  O2T11_RS13095 (O2T11_13095) pilC 2757949..2759172 (+) 1224 WP_064490250.1 type II secretion system F family protein Machinery gene
  O2T11_RS13100 (O2T11_13100) pilD 2759237..2760106 (+) 870 WP_025622886.1 A24 family peptidase Machinery gene
  O2T11_RS13105 (O2T11_13105) coaE 2760107..2760721 (+) 615 WP_025633754.1 dephospho-CoA kinase -
  O2T11_RS13110 (O2T11_13110) zapD 2760749..2761489 (+) 741 WP_023624252.1 cell division protein ZapD -
  O2T11_RS13115 (O2T11_13115) yacG 2761558..2761752 (+) 195 WP_005462546.1 DNA gyrase inhibitor YacG -
  O2T11_RS13120 (O2T11_13120) rplS 2762105..2762458 (-) 354 WP_005462554.1 50S ribosomal protein L19 -
  O2T11_RS13125 (O2T11_13125) trmD 2762500..2763243 (-) 744 WP_005462562.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  O2T11_RS13130 (O2T11_13130) rimM 2763271..2763819 (-) 549 WP_005462552.1 ribosome maturation factor RimM -
  O2T11_RS13135 (O2T11_13135) rpsP 2763848..2764096 (-) 249 WP_005379962.1 30S ribosomal protein S16 -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45206.36 Da        Isoelectric Point: 10.4368

>NTDB_id=764923 O2T11_RS13095 WP_064490250.1 2757949..2759172(+) (pilC) [Vibrio parahaemolyticus strain PH1273]
MKTTTPQLKNFRWKGVNSSGKKTSGQTLAMSEIEVRERLDAQHIKIKKLKKSSISFLTKLSHRVKGKDITVFTRQISTML
VTGVPLVQALKLVSDNHKKAEMKSILMSVTRAVEAGTPMSKAMRTASNHFDPLYTDLIATGEQSGNLAEVFERLATYREK
NEQLRAKVIKALIYPAMVILVALGVSFIMLTKVIPEFEKMFVGFGAELPWFTRQVLDLSAWTQNWSPFIALGSISVFISA
RVLSKRSDSFRLMLNRSVLKFPVLGAVLSKAAIAKFSRTLATSFTAGIPILTSLKTTSKTSGNMHYQLAIEEVYRDTAAG
MPMYVAMRNCNVFPELVLQMVMIGEESGRLDDMLNKVATIYEFEVDNTVDNLSKVLEPLIIVFLGIVVGGLVTAMYLPIF
NLMSVLG

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=764923 O2T11_RS13095 WP_064490250.1 2757949..2759172(+) (pilC) [Vibrio parahaemolyticus strain PH1273]
ATGAAAACTACGACACCACAATTAAAGAACTTCCGTTGGAAAGGCGTCAACAGCTCAGGGAAAAAGACCTCTGGTCAAAC
TCTGGCAATGAGCGAAATCGAAGTACGAGAGCGCTTAGATGCCCAGCACATCAAAATCAAAAAGCTAAAGAAAAGCAGCA
TCTCTTTTTTGACCAAACTTAGCCATCGCGTAAAAGGGAAAGACATCACGGTTTTCACTCGTCAAATCTCAACGATGCTG
GTAACCGGTGTGCCGCTAGTACAAGCATTGAAATTGGTCTCTGATAACCACAAAAAAGCGGAAATGAAATCCATTTTGAT
GAGTGTAACTCGGGCTGTTGAAGCGGGTACGCCGATGTCCAAAGCGATGCGTACCGCCAGCAACCATTTTGACCCGCTAT
ATACCGACCTGATTGCGACAGGAGAACAATCGGGCAACTTAGCCGAAGTGTTCGAACGCTTAGCTACCTACAGGGAAAAA
AATGAGCAGCTTAGAGCCAAAGTGATCAAAGCTCTAATATATCCAGCCATGGTTATTCTAGTTGCACTGGGAGTATCGTT
TATCATGCTAACCAAGGTCATTCCCGAGTTTGAAAAAATGTTTGTTGGCTTTGGCGCTGAATTGCCATGGTTTACAAGGC
AAGTCTTAGATCTTTCCGCTTGGACACAAAACTGGAGCCCATTTATCGCACTTGGCTCCATCAGTGTATTTATCTCCGCG
AGAGTACTCTCTAAGCGTTCAGATTCTTTTCGCTTAATGCTCAACCGCTCTGTGCTTAAGTTTCCAGTCCTTGGGGCAGT
TTTATCGAAAGCCGCTATCGCAAAATTTAGTCGAACCCTCGCTACGAGCTTTACGGCGGGCATTCCGATTTTAACCAGTT
TAAAAACCACCTCGAAAACGTCCGGAAATATGCATTATCAATTGGCTATCGAAGAGGTTTATCGCGATACCGCAGCAGGA
ATGCCGATGTATGTTGCAATGCGCAATTGCAACGTGTTCCCTGAGTTGGTGCTGCAAATGGTTATGATCGGCGAAGAATC
CGGCCGACTTGACGATATGCTCAATAAAGTCGCCACAATTTACGAGTTTGAAGTGGACAACACCGTCGATAACCTCAGTA
AAGTCTTAGAACCATTAATTATCGTTTTTTTAGGTATCGTTGTCGGTGGCTTGGTCACAGCAATGTACTTGCCAATCTTT
AACTTAATGAGTGTATTGGGCTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-398)

Type II secretion system (T2SS), protein F (T2SSF)

(72-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

85.749

100

0.857
  pilC Vibrio cholerae strain A1552

74.074

99.509

0.737
  pilC Acinetobacter baylyi ADP1

43

98.28

0.423
  pilC Acinetobacter baumannii D1279779

41.439

99.017

0.41
  pilG Neisseria gonorrhoeae MS11

40.494

99.509

0.403
  pilG Neisseria meningitidis 44/76-A

40.247

99.509

0.4
  pilC Pseudomonas stutzeri DSM 10701

40.909

97.297

0.398
  pilC Legionella pneumophila strain ERS1305867

39.803

100

0.398