Detailed information NTG0764924

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: O2T11_RS13100
• Genome accession: NZ_CP114186
• Coordinates: 2759237..2760106 (+)
• Length: 289 a.a.
• NCBI ID: WP_025622886.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain PH1273
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2754237..2765106

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
O2T11_RS13080 (O2T11_13080)	nadC	2754616..2755503 (+)	888	WP_015297249.1	carboxylating nicotinate-nucleotide diphosphorylase	-
O2T11_RS13085 (O2T11_13085)	pilA	2755768..2756232 (+)	465	WP_031857216.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	Machinery gene
O2T11_RS13090 (O2T11_13090)	pilB	2756236..2757924 (+)	1689	WP_283658206.1	type IV-A pilus assembly ATPase PilB	Machinery gene
O2T11_RS13095 (O2T11_13095)	pilC	2757949..2759172 (+)	1224	WP_064490250.1	type II secretion system F family protein	Machinery gene
O2T11_RS13100 (O2T11_13100)	pilD	2759237..2760106 (+)	870	WP_025622886.1	A24 family peptidase	Machinery gene
O2T11_RS13105 (O2T11_13105)	coaE	2760107..2760721 (+)	615	WP_025633754.1	dephospho-CoA kinase	-
O2T11_RS13110 (O2T11_13110)	zapD	2760749..2761489 (+)	741	WP_023624252.1	cell division protein ZapD	-
O2T11_RS13115 (O2T11_13115)	yacG	2761558..2761752 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
O2T11_RS13120 (O2T11_13120)	rplS	2762105..2762458 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
O2T11_RS13125 (O2T11_13125)	trmD	2762500..2763243 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
O2T11_RS13130 (O2T11_13130)	rimM	2763271..2763819 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
O2T11_RS13135 (O2T11_13135)	rpsP	2763848..2764096 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32419.51 Da
• Isoelectric Point: 7.1971

>NTDB_id=764924 O2T11_RS13100 WP_025622886.1 2759237..2760106(+) (pilD) [Vibrio parahaemolyticus strain PH1273]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQELLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=764924 O2T11_RS13100 WP_025622886.1 2759237..2760106(+) (pilD) [Vibrio parahaemolyticus strain PH1273]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTGGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTAGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAACTTTTGACATTAAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCTGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCTGCGTGCGCTGGTTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTCGTTCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTAAGCTTAATCTGGGGCGACCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45