Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OIY87_RS00845 Genome accession   NZ_CP113954
Coordinates   127167..127562 (+) Length   131 a.a.
NCBI ID   WP_269725078.1    Uniprot ID   -
Organism   Streptococcus gallolyticus strain XH2168     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 122167..132562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIY87_RS00815 (OIY87_02110) pepA 122945..124012 (-) 1068 WP_061458778.1 glutamyl aminopeptidase -
  OIY87_RS00820 (OIY87_02115) - 124055..124564 (-) 510 WP_061458779.1 GNAT family N-acetyltransferase -
  OIY87_RS00825 (OIY87_02120) - 125014..125307 (+) 294 WP_061458780.1 DUF4651 domain-containing protein -
  OIY87_RS00830 (OIY87_02125) - 125300..125617 (+) 318 WP_009853246.1 thioredoxin family protein -
  OIY87_RS00835 (OIY87_02130) ytpR 125626..126252 (+) 627 WP_253042165.1 YtpR family tRNA-binding protein -
  OIY87_RS00840 (OIY87_02135) - 126339..127055 (-) 717 WP_253042167.1 class I SAM-dependent methyltransferase -
  OIY87_RS00845 (OIY87_02140) ssbA 127167..127562 (+) 396 WP_269725078.1 single-stranded DNA-binding protein Machinery gene
  OIY87_RS00850 (OIY87_02145) - 127679..128485 (+) 807 WP_269725079.1 Cof-type HAD-IIB family hydrolase -
  OIY87_RS00855 (OIY87_02150) - 128640..129605 (+) 966 WP_061458830.1 sugar ABC transporter substrate-binding protein -
  OIY87_RS00860 (OIY87_02155) - 129596..130921 (+) 1326 WP_373128941.1 sensor histidine kinase -
  OIY87_RS00865 (OIY87_02160) - 130918..131601 (+) 684 WP_253042171.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14936.98 Da        Isoelectric Point: 6.4767

>NTDB_id=763805 OIY87_RS00845 WP_269725078.1 127167..127562(+) (ssbA) [Streptococcus gallolyticus strain XH2168]
MYNKVIMIGRLTAQPELVTTSNEKFVTRVTLAVNRRFKSQNGEREADFISVVVWGRLAETLVSYAGKGSLISINGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRAMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=763805 OIY87_RS00845 WP_269725078.1 127167..127562(+) (ssbA) [Streptococcus gallolyticus strain XH2168]
ATGTACAATAAAGTTATTATGATTGGTCGTTTGACGGCGCAGCCTGAGCTTGTGACGACGTCAAATGAGAAATTTGTTAC
ACGTGTAACACTAGCAGTCAACCGCCGTTTTAAATCGCAAAATGGTGAGCGTGAGGCTGATTTTATTTCAGTTGTGGTTT
GGGGACGTTTGGCAGAAACACTTGTTTCTTATGCTGGAAAAGGAAGTCTGATTTCGATTAATGGCGAGCTTCGCACACGT
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGCCATGCGAGAAAATAATGTGGCAAACGACCTCGCTGATTTAGTTTTGGAAGAGGAAGAATTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB/cilA Streptococcus pneumoniae R6

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae Rx1

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae D39

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus mitis NCTC 12261

74.809

100

0.748
  ssbB/cilA Streptococcus mitis SK321

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

61.404

87.023

0.534
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397