Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OZX61_RS10710 Genome accession   NZ_CP113932
Coordinates   2223787..2225010 (+) Length   407 a.a.
NCBI ID   WP_277094772.1    Uniprot ID   -
Organism   Acinetobacter sp. ESL0695     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2218787..2230010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OZX61_RS10680 (OZX61_10680) - 2219122..2220126 (+) 1005 WP_277095659.1 zinc-binding alcohol dehydrogenase family protein -
  OZX61_RS10685 (OZX61_10685) - 2220139..2220423 (+) 285 WP_277094769.1 putative quinol monooxygenase -
  OZX61_RS10695 (OZX61_10695) secG 2220637..2220960 (-) 324 WP_195770900.1 preprotein translocase subunit SecG -
  OZX61_RS10700 (OZX61_10700) tpiA 2220981..2221775 (-) 795 WP_277094770.1 triose-phosphate isomerase -
  OZX61_RS10705 (OZX61_10705) pilB 2222046..2223764 (+) 1719 WP_277094771.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OZX61_RS10710 (OZX61_10710) pilC 2223787..2225010 (+) 1224 WP_277094772.1 type II secretion system F family protein Machinery gene
  OZX61_RS10715 (OZX61_10715) pilD 2225010..2225867 (+) 858 WP_277094773.1 A24 family peptidase Machinery gene
  OZX61_RS10720 (OZX61_10720) coaE 2225869..2226471 (+) 603 WP_195770895.1 dephospho-CoA kinase -
  OZX61_RS10725 (OZX61_10725) rlmB 2226468..2227211 (-) 744 WP_277094774.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OZX61_RS10730 (OZX61_10730) - 2227321..2227644 (-) 324 WP_195770893.1 pyrimidine/purine nucleoside phosphorylase -
  OZX61_RS10735 (OZX61_10735) recN 2227976..2229637 (+) 1662 WP_195770892.1 DNA repair protein RecN -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 45144.48 Da        Isoelectric Point: 10.0074

>NTDB_id=763629 OZX61_RS10710 WP_277094772.1 2223787..2225010(+) (pilC) [Acinetobacter sp. ESL0695]
MAKKADQILNFAYTGADRKGLKVKGEISSRNMALAKVTLRKQGIQVATIRQKRKNILEGVIKKKISTQDITIFTRQLATM
MKAGVPLVQSFEIVAGGLDNPAMRDVVLGIKSEVEGGNTFTQALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYKE
KSEILKQKIKKAMKYPLTVIIVALIVTIILMVKVVPTFQSMFASFGAELPAFTQMVVNMSNWMQSYWYILIGIIVVSVVT
ILQLHKRSLKFRNFLDKLILKLPIFGDLVYKSIIARYSRTLATTFAAGVPLIEALESTARATNNVIYEDAVMRIRDDVAS
GQQLQFSMRNADRFPSMAIQMVAIGEESGALDTMLDKVATYYESEVDNAVDGLTAMMEPLIMAILGILVGGLVVAMYLPI
FKMGSVI

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=763629 OZX61_RS10710 WP_277094772.1 2223787..2225010(+) (pilC) [Acinetobacter sp. ESL0695]
GTGGCTAAAAAAGCAGATCAGATATTAAACTTTGCCTATACGGGCGCAGACCGTAAAGGACTTAAAGTTAAAGGGGAAAT
ATCTTCGCGTAATATGGCACTTGCAAAAGTGACTTTACGCAAACAAGGTATTCAAGTTGCAACAATTCGACAAAAAAGAA
AGAATATCCTTGAAGGTGTGATTAAAAAGAAAATCTCAACTCAAGATATTACGATTTTTACACGACAATTGGCAACCATG
ATGAAAGCAGGTGTACCATTAGTACAAAGCTTTGAAATCGTTGCAGGTGGTTTGGACAATCCTGCCATGCGAGATGTAGT
ATTAGGGATTAAATCTGAGGTTGAAGGCGGGAATACATTTACCCAAGCCCTAAGAAAGTATCCTCAGTATTTTGATAATC
TCTTTTGTTCATTGGTTGAGTCTGGAGAGCAATCGGGTGCGCTAGAAACCATGCTTGACCGTGTTGCTGTTTATAAAGAA
AAAAGTGAAATACTGAAGCAAAAGATTAAAAAGGCAATGAAATATCCTTTAACGGTTATTATTGTTGCACTTATTGTGAC
CATTATTTTGATGGTTAAAGTTGTACCAACTTTCCAAAGTATGTTTGCTTCTTTTGGTGCAGAGCTACCCGCCTTTACCC
AAATGGTTGTAAACATGTCAAATTGGATGCAATCATATTGGTATATTCTCATTGGCATTATAGTGGTGAGCGTTGTTACC
ATACTTCAACTTCACAAACGTAGTTTAAAGTTTAGAAACTTCTTAGATAAACTTATTTTAAAACTACCAATTTTTGGTGA
TCTTGTTTATAAATCAATTATTGCACGTTATAGTCGTACACTTGCAACCACTTTTGCTGCAGGTGTTCCGCTGATTGAAG
CACTTGAATCCACAGCACGTGCAACCAATAATGTAATCTACGAAGATGCAGTAATGCGTATACGTGATGACGTTGCTTCA
GGTCAGCAACTCCAGTTTTCAATGCGTAATGCAGATCGTTTTCCAAGTATGGCCATACAAATGGTCGCGATTGGTGAAGA
GTCTGGTGCATTAGATACTATGCTTGATAAAGTCGCCACATATTACGAAAGTGAAGTAGATAACGCAGTGGATGGCCTCA
CAGCAATGATGGAACCATTAATCATGGCAATTCTTGGTATCTTAGTTGGTGGACTTGTCGTTGCCATGTATTTACCAATT
TTCAAAATGGGCTCCGTCATCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(278-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

80.247

99.509

0.799
  pilC Acinetobacter baylyi ADP1

76.716

100

0.769
  pilC Pseudomonas stutzeri DSM 10701

60.197

100

0.602
  pilC Legionella pneumophila strain ERS1305867

53.071

100

0.531
  pilG Neisseria meningitidis 44/76-A

46.891

94.84

0.445
  pilG Neisseria gonorrhoeae MS11

46.891

94.84

0.445
  pilC Vibrio cholerae strain A1552

43.243

100

0.432
  pilC Vibrio campbellii strain DS40M4

41.032

100

0.41
  pilC Thermus thermophilus HB27

36.935

97.789

0.361