Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OXH74_RS03880 Genome accession   NZ_CP113889
Coordinates   836837..838054 (+) Length   405 a.a.
NCBI ID   WP_375740143.1    Uniprot ID   -
Organism   Pseudomonas boanensis strain L337     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 831837..843054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH74_RS03860 (OXH74_03860) nadC 833220..834068 (+) 849 WP_375740140.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OXH74_RS03870 (OXH74_03870) - 834487..834900 (-) 414 WP_375740141.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OXH74_RS03875 (OXH74_03875) pilB 835128..836834 (+) 1707 WP_375740142.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OXH74_RS03880 (OXH74_03880) pilC 836837..838054 (+) 1218 WP_375740143.1 type II secretion system F family protein Machinery gene
  OXH74_RS03885 (OXH74_03885) pilD 838057..838929 (+) 873 WP_375740144.1 prepilin peptidase Machinery gene
  OXH74_RS03890 (OXH74_03890) coaE 838926..839537 (+) 612 WP_375740145.1 dephospho-CoA kinase -
  OXH74_RS03895 (OXH74_03895) yacG 839534..839734 (+) 201 WP_375740146.1 DNA gyrase inhibitor YacG -
  OXH74_RS03900 (OXH74_03900) - 840146..840679 (-) 534 WP_375740147.1 transposase -
  OXH74_RS03905 (OXH74_03905) - 840917..841132 (-) 216 WP_375740148.1 hypothetical protein -
  OXH74_RS03910 (OXH74_03910) - 841379..842068 (-) 690 WP_375740149.1 energy-coupling factor ABC transporter permease -
  OXH74_RS03915 (OXH74_03915) - 842065..842532 (-) 468 WP_375740150.1 FAD/FMN-containing dehydrogenase -
  OXH74_RS03920 (OXH74_03920) - 842537..842959 (-) 423 WP_375740151.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 43764.51 Da        Isoelectric Point: 9.6473

>NTDB_id=763339 OXH74_RS03880 WP_375740143.1 836837..838054(+) (pilC) [Pseudomonas boanensis strain L337]
MADKALKTSTFAWEGTDKKGSKVKGELSGQNPALIKAQLRKQGINPTRVRKKSTSLLSAGKKIKPLDIALFTRQMATMMK
AGVPLMQSFDIIGEGFEKPAMRTLVNEVKQEVSAGNSLANSLRKKPDYFDELYCNLVDSGEQAGALETLLDRIATYKEKT
EALKAKIKKALNYPIAVIVVAIVVSAILLIKVVPQFQSVFASFGAELPAFTLMVIGISEVLQEWWFIVLLGFFVLGFVVQ
QAHKKSEKFRDGVDHAVLKLPIVGDILYKSAVARFARTLATTFAAGVPLVDALDSVAGASGNVVFKNAVMKVKQDVSTGM
QLNFSMRSTGVFPAMAVQMTAIGEESGALDDMLDKVASFYEAEVDNAVDGLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=763339 OXH74_RS03880 WP_375740143.1 836837..838054(+) (pilC) [Pseudomonas boanensis strain L337]
ATGGCGGACAAAGCGCTCAAAACCAGTACCTTCGCCTGGGAGGGGACCGACAAGAAAGGCTCCAAGGTCAAAGGCGAGCT
CAGCGGACAGAATCCGGCGCTGATCAAGGCACAACTGCGCAAGCAAGGCATCAACCCGACTCGGGTACGCAAGAAGTCTA
CTTCTCTGCTCAGCGCCGGGAAGAAGATCAAGCCCCTGGACATCGCCCTCTTCACCCGCCAGATGGCGACCATGATGAAG
GCCGGTGTGCCGCTGATGCAGTCATTCGACATCATCGGTGAAGGCTTTGAGAAGCCTGCCATGCGTACCTTGGTGAACGA
GGTCAAACAGGAAGTCTCTGCGGGTAACAGCCTCGCCAACTCCCTAAGAAAGAAGCCGGATTATTTCGACGAGCTTTACT
GCAACTTGGTGGATTCCGGTGAGCAGGCTGGCGCCCTGGAAACACTGCTGGACCGCATCGCCACCTATAAGGAAAAGACC
GAAGCACTAAAGGCCAAGATCAAAAAGGCGCTGAACTACCCTATCGCTGTAATCGTGGTAGCCATAGTCGTCTCGGCCAT
CCTGCTGATCAAGGTCGTGCCGCAGTTCCAGTCAGTTTTTGCCAGCTTTGGGGCCGAACTGCCCGCCTTTACCTTGATGG
TGATCGGGATTTCTGAAGTCTTGCAGGAATGGTGGTTTATCGTCCTCCTCGGCTTTTTCGTACTGGGATTCGTCGTTCAG
CAGGCCCATAAGAAATCCGAGAAATTCCGAGACGGGGTTGACCATGCAGTCCTTAAACTCCCCATCGTTGGTGACATCCT
GTACAAATCTGCCGTTGCCCGCTTCGCCAGAACCTTGGCGACAACCTTCGCCGCTGGCGTCCCACTTGTTGACGCCTTGG
ACTCGGTGGCTGGGGCCAGCGGCAACGTCGTGTTCAAGAATGCTGTGATGAAGGTCAAACAGGACGTTTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCTCTACCGGCGTGTTCCCAGCCATGGCCGTGCAGATGACTGCAATCGGTGAGGAGTCCGG
CGCGCTGGATGACATGCTGGACAAAGTGGCCAGCTTCTATGAGGCAGAAGTGGATAACGCCGTCGACGGCCTAACCGCAC
TCATGGAGCCCATGATCATGGCGGTGCTCGGCGTGTTGGTCGGCGGCCTGATCATCGCCATGTACCTACCTATCTTCCAA
CTCGGCAACGTTGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.765

100

0.788
  pilC Acinetobacter baumannii D1279779

61.634

99.753

0.615
  pilC Acinetobacter baylyi ADP1

60.784

100

0.612
  pilC Legionella pneumophila strain ERS1305867

52.882

98.519

0.521
  pilG Neisseria gonorrhoeae MS11

46.535

99.753

0.464
  pilG Neisseria meningitidis 44/76-A

46.287

99.753

0.462
  pilC Vibrio cholerae strain A1552

41.523

100

0.417
  pilC Vibrio campbellii strain DS40M4

41.162

97.778

0.402
  pilC Thermus thermophilus HB27

36.5

98.765

0.36