Detailed information NTG0763340

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OXH74_RS03885
• Genome accession: NZ_CP113889
• Coordinates: 838057..838929 (+)
• Length: 290 a.a.
• NCBI ID: WP_375740144.1
• Uniprot ID: -
• Organism: Pseudomonas boanensis strain L337
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 833057..843929

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OXH74_RS03860 (OXH74_03860)	nadC	833220..834068 (+)	849	WP_375740140.1	carboxylating nicotinate-nucleotide diphosphorylase	-
OXH74_RS03870 (OXH74_03870)	-	834487..834900 (-)	414	WP_375740141.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OXH74_RS03875 (OXH74_03875)	pilB	835128..836834 (+)	1707	WP_375740142.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OXH74_RS03880 (OXH74_03880)	pilC	836837..838054 (+)	1218	WP_375740143.1	type II secretion system F family protein	Machinery gene
OXH74_RS03885 (OXH74_03885)	pilD	838057..838929 (+)	873	WP_375740144.1	prepilin peptidase	Machinery gene
OXH74_RS03890 (OXH74_03890)	coaE	838926..839537 (+)	612	WP_375740145.1	dephospho-CoA kinase	-
OXH74_RS03895 (OXH74_03895)	yacG	839534..839734 (+)	201	WP_375740146.1	DNA gyrase inhibitor YacG	-
OXH74_RS03900 (OXH74_03900)	-	840146..840679 (-)	534	WP_375740147.1	transposase	-
OXH74_RS03905 (OXH74_03905)	-	840917..841132 (-)	216	WP_375740148.1	hypothetical protein	-
OXH74_RS03910 (OXH74_03910)	-	841379..842068 (-)	690	WP_375740149.1	energy-coupling factor ABC transporter permease	-
OXH74_RS03915 (OXH74_03915)	-	842065..842532 (-)	468	WP_375740150.1	FAD/FMN-containing dehydrogenase	-
OXH74_RS03920 (OXH74_03920)	-	842537..842959 (-)	423	WP_375740151.1	GNAT family N-acetyltransferase	-
OXH74_RS03925 (OXH74_03925)	-	843094..843720 (+)	627	WP_215372964.1	DUF1780 domain-containing protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31914.99 Da
• Isoelectric Point: 6.6210

>NTDB_id=763340 OXH74_RS03885 WP_375740144.1 838057..838929(+) (pilD) [Pseudomonas boanensis strain L337]
MQLIEFLASHVLAFVLCVFVLGLLIGSFLNVVIYRLPQMMFRDWQEQAREALSLPAEPKGPVFNLVLPNSRCPHCNHEIK
VWENVPIVSYLALGGKCSACKAPISKRYPLVELACGLLSAYVAWHLGFGWATAALLVLTWGLLAMSLIDVDHQLLPDALV
LPLLWLGLILNSQGLFASLEDALWGTVAGYLSLWSVYWLFKLITGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVLGVIMLRLRDQDTATPIPFGPYLAIAGWIALLWGDQITGTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=763340 OXH74_RS03885 WP_375740144.1 838057..838929(+) (pilD) [Pseudomonas boanensis strain L337]
ATGCAGTTGATCGAATTCCTGGCCAGCCATGTGCTGGCCTTTGTTTTGTGCGTGTTCGTCCTCGGCCTGCTGATTGGCAG
CTTCCTCAATGTGGTGATCTATCGCCTGCCGCAGATGATGTTCCGGGATTGGCAGGAGCAGGCCCGTGAGGCATTGAGCC
TGCCGGCCGAGCCCAAAGGCCCGGTATTCAACCTGGTGCTGCCGAACTCCCGCTGCCCCCACTGCAACCACGAGATCAAG
GTGTGGGAGAACGTGCCCATCGTCAGCTACCTGGCGCTGGGCGGCAAATGTTCGGCCTGCAAGGCACCGATCAGCAAACG
CTACCCGTTGGTGGAGCTGGCCTGCGGGCTGCTCTCGGCCTATGTGGCTTGGCACCTGGGCTTTGGCTGGGCAACCGCCG
CGCTGTTGGTACTGACCTGGGGCCTGCTGGCCATGAGCCTGATCGACGTCGACCATCAGCTGTTGCCGGATGCGCTGGTG
CTGCCGCTGCTCTGGCTCGGGCTGATCCTCAACAGCCAGGGCCTGTTCGCCAGCCTGGAGGATGCGCTCTGGGGCACGGT
GGCCGGTTACCTGAGCCTGTGGTCGGTCTATTGGCTGTTCAAACTGATTACCGGCAAGGAAGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCATGATCGGGGCCTGGGGCGGCTGGCAGGTGTTGCCGCTGACCATCCTGCTCTCTTCCCTGGTGGGC
GCCGTGCTGGGCGTGATCATGCTGCGCCTGCGCGATCAGGACACTGCCACGCCCATCCCCTTTGGTCCTTACCTGGCCAT
TGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCGGGACCTATCTGCAGTTCGCCGGTTTCAAATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-125)

• Type IV leader peptidase family (Peptidase_A24) (136-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.556	93.103	0.517
pilD	Vibrio campbellii strain DS40M4	52.015	94.138	0.49
pilD	Acinetobacter nosocomialis M2	49.474	98.276	0.486
pilD	Acinetobacter baumannii D1279779	48.958	99.31	0.486
pilD	Neisseria gonorrhoeae MS11	50.192	90	0.452