Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OXH62_RS12770 Genome accession   NZ_CP113803
Coordinates   2781376..2782593 (+) Length   405 a.a.
NCBI ID   WP_375747901.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain YJY915     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2776376..2787593
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXH62_RS12750 (OXH62_12690) - 2777898..2778194 (+) 297 WP_375747899.1 DUF2845 domain-containing protein -
  OXH62_RS12755 (OXH62_12695) - 2778362..2778718 (-) 357 WP_085608680.1 BON domain-containing protein -
  OXH62_RS12760 (OXH62_12700) - 2779030..2779446 (-) 417 WP_011335978.1 pilin -
  OXH62_RS12765 (OXH62_12705) pilB 2779673..2781373 (+) 1701 WP_375747900.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OXH62_RS12770 (OXH62_12710) pilC 2781376..2782593 (+) 1218 WP_375747901.1 type II secretion system F family protein Machinery gene
  OXH62_RS12775 (OXH62_12715) pilD 2782595..2783467 (+) 873 WP_127799972.1 A24 family peptidase Machinery gene
  OXH62_RS12780 (OXH62_12720) coaE 2783464..2784087 (+) 624 WP_007959586.1 dephospho-CoA kinase -
  OXH62_RS12785 (OXH62_12725) yacG 2784084..2784284 (+) 201 WP_007959585.1 DNA gyrase inhibitor YacG -
  OXH62_RS12790 (OXH62_12730) - 2784291..2784506 (-) 216 WP_007959584.1 hypothetical protein -
  OXH62_RS12795 (OXH62_12735) - 2784572..2785261 (-) 690 WP_115079246.1 energy-coupling factor ABC transporter permease -
  OXH62_RS12800 (OXH62_12740) - 2785395..2786021 (+) 627 WP_007959580.1 DUF1780 domain-containing protein -
  OXH62_RS12805 (OXH62_12745) - 2786018..2786545 (+) 528 WP_258712319.1 MOSC domain-containing protein -
  OXH62_RS12810 (OXH62_12750) - 2786597..2786770 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44102.75 Da        Isoelectric Point: 10.1211

>NTDB_id=763139 OXH62_RS12770 WP_375747901.1 2781376..2782593(+) (pilC) [Pseudomonas chlororaphis strain YJY915]
MAVKAAKISVYAWEGTDRKGSKVTGELSGQNPALVKAQLRKQGINPGKVRKKSASLLSFGKRIKAQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFAAALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
ESLKAKIRKAMTYPSAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPAFTLMVISLSEFMQQWWWAILGLLVAGFFGTR
HALKKSQALRDRRDAWFLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRIRQDVSTGM
QLNFSMRSTGIFPNMAVQMTAIGEESGALDEMLDKVAGFYEDEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=763139 OXH62_RS12770 WP_375747901.1 2781376..2782593(+) (pilC) [Pseudomonas chlororaphis strain YJY915]
ATGGCGGTCAAGGCAGCGAAAATCAGTGTCTACGCCTGGGAAGGTACAGACCGCAAAGGCAGCAAGGTGACCGGCGAGTT
GAGCGGCCAGAACCCCGCACTGGTCAAGGCCCAATTGCGCAAGCAGGGCATCAACCCCGGCAAGGTACGCAAGAAATCCG
CCTCGCTGCTGAGCTTCGGCAAGCGCATCAAGGCCCAGGACATTGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTACCCCTGTTGCAGTCGTTCGACATCATTGGCGAAGGCTTCGAAAACCCGGCCATGCGCAAGCTGGTCGACGA
GGTGAAACAGGAAGTCGCCGCCGGCAACAGCTTCGCCGCCGCGCTGCGCAAGAAGCCTCAGTATTTTGACGAGTTGTACT
GCAACCTGGTGGATGCCGGTGAGCAGTCCGGCGCCCTCGACACCCTGCTGGAGCGGGTCGCGACCTACAAGGAAAAGAGC
GAAAGTCTCAAAGCCAAGATCAGGAAGGCCATGACCTATCCGTCCGCCGTGGTGCTGGTGGCGGCGGTGGTTACCGGGAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTTCAGTCGGTGTTCTCTGGCTTCGGCGCCGAACTGCCGGCCTTCACGCTGATGG
TGATCAGCCTGTCCGAATTCATGCAGCAATGGTGGTGGGCGATTCTCGGTTTGCTGGTGGCCGGCTTTTTCGGCACCCGC
CATGCCCTGAAAAAATCCCAGGCCCTGCGCGACCGACGCGACGCCTGGTTTCTCAAGCTGCCGCTGGTGGGCACGCTGAT
GTACAAGTCCGCCGTGGCGCGGTTTGCCCGGACCCTGTCGACCACCTTCGCAGCCGGTGTGCCGTTGGTTGAAGCGCTGG
ACTCGGTGGCCGGGGCCACCGGCAACGTGGTGTTCAAGCGCGCCGTGCTGCGCATCCGCCAGGACGTTTCCACCGGCATG
CAGCTGAATTTCTCGATGCGCTCCACCGGCATCTTTCCGAACATGGCGGTGCAGATGACCGCCATCGGCGAAGAGTCCGG
CGCACTGGACGAGATGCTCGACAAGGTCGCGGGGTTCTATGAGGACGAAGTGGACAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTCGGGGTGATCGTCGGCGGTCTCGTAGTGGCGATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.817

100

0.756
  pilC Acinetobacter baylyi ADP1

58.824

100

0.593
  pilC Acinetobacter baumannii D1279779

58.824

100

0.593
  pilC Legionella pneumophila strain ERS1305867

53.25

98.765

0.526
  pilC Vibrio cholerae strain A1552

44.192

97.778

0.432
  pilG Neisseria gonorrhoeae MS11

42.68

99.506

0.425
  pilG Neisseria meningitidis 44/76-A

42.469

100

0.425
  pilC Vibrio campbellii strain DS40M4

41.22

100

0.417
  pilC Thermus thermophilus HB27

39.401

99.012

0.39