Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | OXH62_RS12775 | Genome accession | NZ_CP113803 |
| Coordinates | 2782595..2783467 (+) | Length | 290 a.a. |
| NCBI ID | WP_127799972.1 | Uniprot ID | - |
| Organism | Pseudomonas chlororaphis strain YJY915 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2777595..2788467
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OXH62_RS12750 (OXH62_12690) | - | 2777898..2778194 (+) | 297 | WP_375747899.1 | DUF2845 domain-containing protein | - |
| OXH62_RS12755 (OXH62_12695) | - | 2778362..2778718 (-) | 357 | WP_085608680.1 | BON domain-containing protein | - |
| OXH62_RS12760 (OXH62_12700) | - | 2779030..2779446 (-) | 417 | WP_011335978.1 | pilin | - |
| OXH62_RS12765 (OXH62_12705) | pilB | 2779673..2781373 (+) | 1701 | WP_375747900.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OXH62_RS12770 (OXH62_12710) | pilC | 2781376..2782593 (+) | 1218 | WP_375747901.1 | type II secretion system F family protein | Machinery gene |
| OXH62_RS12775 (OXH62_12715) | pilD | 2782595..2783467 (+) | 873 | WP_127799972.1 | A24 family peptidase | Machinery gene |
| OXH62_RS12780 (OXH62_12720) | coaE | 2783464..2784087 (+) | 624 | WP_007959586.1 | dephospho-CoA kinase | - |
| OXH62_RS12785 (OXH62_12725) | yacG | 2784084..2784284 (+) | 201 | WP_007959585.1 | DNA gyrase inhibitor YacG | - |
| OXH62_RS12790 (OXH62_12730) | - | 2784291..2784506 (-) | 216 | WP_007959584.1 | hypothetical protein | - |
| OXH62_RS12795 (OXH62_12735) | - | 2784572..2785261 (-) | 690 | WP_115079246.1 | energy-coupling factor ABC transporter permease | - |
| OXH62_RS12800 (OXH62_12740) | - | 2785395..2786021 (+) | 627 | WP_007959580.1 | DUF1780 domain-containing protein | - |
| OXH62_RS12805 (OXH62_12745) | - | 2786018..2786545 (+) | 528 | WP_258712319.1 | MOSC domain-containing protein | - |
| OXH62_RS12810 (OXH62_12750) | - | 2786597..2786770 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| OXH62_RS12815 (OXH62_12755) | - | 2786834..2788132 (+) | 1299 | WP_064599500.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32233.58 Da Isoelectric Point: 7.3999
>NTDB_id=763140 OXH62_RS12775 WP_127799972.1 2782595..2783467(+) (pilD) [Pseudomonas chlororaphis strain YJY915]
MPIDELFSLYPLAFVITALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGEAPLPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYMFLRGSCSSCSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVLGYMALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK
MPIDELFSLYPLAFVITALLLGLVVGSFLNVLIWRLPKMLEREWRQQAHDVLGLPGEAPLPTYNLMLPHSQCPHCGHRIR
AWENIPVLSYMFLRGSCSSCSAPISKRYPLTELACGLLSAFIAWHLGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFELFVPLHDALWGAVLGYMALWSVFWLFKLITGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AVLGVILLKLRDQKTSTPIPFGPYLAIAGWIALLWGGQITGFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=763140 OXH62_RS12775 WP_127799972.1 2782595..2783467(+) (pilD) [Pseudomonas chlororaphis strain YJY915]
ATGCCTATCGACGAACTCTTCAGTCTCTATCCGCTGGCCTTTGTCATCACCGCCCTGCTGCTGGGGCTGGTGGTCGGCAG
TTTTCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGTGAATGGCGCCAGCAGGCTCACGATGTGTTGGGGC
TGCCCGGTGAAGCGCCGTTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATTCGC
GCGTGGGAAAACATTCCCGTGTTGAGTTACATGTTCCTGCGCGGAAGCTGCTCAAGTTGCAGCGCACCGATCAGCAAGCG
CTACCCGCTGACCGAACTGGCCTGCGGTCTGCTCTCGGCGTTCATCGCTTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAGCATCAGTTGCTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTGCCGCTGCACGATGCCCTGTGGGGCGCGGT
GCTGGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGATCACTGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCATTCTTTTGTCCTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGTGACCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTCTTCAGTCTCTATCCGCTGGCCTTTGTCATCACCGCCCTGCTGCTGGGGCTGGTGGTCGGCAG
TTTTCTCAACGTGTTGATCTGGCGCCTGCCGAAAATGCTCGAGCGTGAATGGCGCCAGCAGGCTCACGATGTGTTGGGGC
TGCCCGGTGAAGCGCCGTTGCCCACCTACAACCTGATGCTGCCGCACTCGCAATGCCCGCACTGTGGCCACCGGATTCGC
GCGTGGGAAAACATTCCCGTGTTGAGTTACATGTTCCTGCGCGGAAGCTGCTCAAGTTGCAGCGCACCGATCAGCAAGCG
CTACCCGCTGACCGAACTGGCCTGCGGTCTGCTCTCGGCGTTCATCGCTTGGCACCTGGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTGCTGACCTGGGGCCTGTTGGCCATGAGCCTGATCGACACCGAGCATCAGTTGCTGCCCGACGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGAGCTGTTCGTGCCGCTGCACGATGCCCTGTGGGGCGCGGT
GCTGGGTTACATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGATCACTGGCAAGGACGGCATCGGTCACGGCGATT
TCAAGCTGCTGGCGCTGCTCGGGGCCTGGGGCGGCTGGCAGATTTTGCCGCTGACCATTCTTTTGTCCTCGCTGGTGGGC
GCCGTGCTCGGGGTGATTTTGCTCAAGCTGCGTGACCAGAAAACCTCGACGCCGATCCCCTTCGGCCCGTATCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGGCTTCTATTGGCAGTTTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
52.128 |
97.241 |
0.507 |
| pilD | Vibrio campbellii strain DS40M4 |
51.418 |
97.241 |
0.5 |
| pilD | Acinetobacter baumannii D1279779 |
48.54 |
94.483 |
0.459 |
| pilD | Acinetobacter nosocomialis M2 |
47.81 |
94.483 |
0.452 |
| pilD | Neisseria gonorrhoeae MS11 |
47.037 |
93.103 |
0.438 |