Detailed information NTG0763131

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: OXH62_RS04010
• Genome accession: NZ_CP113803
• Coordinates: 895627..896736 (-)
• Length: 369 a.a.
• NCBI ID: WP_127798308.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain YJY915
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 890627..901736

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OXH62_RS03995 (OXH62_03990)	-	891429..892820 (+)	1392	WP_007952055.1	GntP family permease	-
OXH62_RS04000 (OXH62_03995)	hbdH	892828..893601 (+)	774	WP_375747243.1	3-hydroxybutyrate dehydrogenase	-
OXH62_RS04005 (OXH62_04000)	-	893665..895620 (+)	1956	WP_375747244.1	acetoacetate--CoA ligase	-
OXH62_RS04010 (OXH62_04005)	pilU	895627..896736 (-)	1110	WP_127798308.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
OXH62_RS04015 (OXH62_04010)	-	896864..899401 (+)	2538	WP_375747245.1	PAS domain-containing protein	-
OXH62_RS04020 (OXH62_04015)	-	899452..899727 (+)	276	WP_007952044.1	peptidylprolyl isomerase	-
OXH62_RS04025 (OXH62_04020)	-	899777..900712 (-)	936	WP_375747246.1	sugar kinase	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 41030.93 Da
• Isoelectric Point: 6.8357

>NTDB_id=763131 OXH62_RS04010 WP_127798308.1 895627..896736(-) (pilU) [Pseudomonas chlororaphis strain YJY915]
MEIDALLKQLASRHGSDLFLSTGAPPSARFDGVLAPLSDQPFKPGEVATVAASLMDAEQRREFDRDLEMNLAISRTGIGR
FRVNIFKQRNDVSIVIRNVKLDIPRFEDLKLPSVLLESVMLKQGLILFVGATDSGKSTSLAALIDHRNRHSSGHIITIED
PVEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFAETGHLVLSTLHANNANQALDRI
INFFPEERRPQLLHALGNHLKAFVSQRLVRTRDGQRRAAAEVMLGTPTIADLIRRNDFGELKTIMEKSAELGMQTFDGAL
FALVAEGVIDEDEALKNADSVNNLRLRLKLHADTMPSPPPSTGEWGLMD

Nucleotide

• Length: 1110 bp

>NTDB_id=763131 OXH62_RS04010 WP_127798308.1 895627..896736(-) (pilU) [Pseudomonas chlororaphis strain YJY915]
ATGGAAATCGATGCATTGCTCAAACAACTGGCGAGCCGCCACGGTTCGGATCTGTTCCTGTCCACGGGCGCACCGCCCAG
TGCGCGGTTCGACGGGGTGCTGGCGCCCTTGAGCGATCAGCCGTTCAAACCCGGCGAAGTGGCGACTGTCGCCGCCTCCC
TGATGGACGCCGAGCAGCGCCGGGAGTTCGACCGGGATCTGGAAATGAACCTGGCGATTTCCCGCACGGGCATCGGCCGC
TTCCGGGTCAACATCTTCAAACAGCGCAACGACGTGTCGATCGTGATCCGTAACGTCAAACTCGACATTCCGCGATTCGA
AGACCTGAAACTGCCGTCGGTATTGCTCGAATCAGTGATGCTCAAGCAAGGCCTGATCCTGTTCGTCGGCGCCACCGACT
CGGGTAAATCCACGTCGCTGGCGGCACTGATCGATCATCGCAATCGCCACAGCAGCGGGCACATCATCACCATTGAAGAC
CCGGTGGAATACATCCATCGTCACAAAAAATCGATCATCAACCAGCGCGAAGTCGGGGTCGATACCCGCAGCTTTCACGC
TGCGCTGAAAAACACCCTGCGCCAGGCGCCGGACGTGGTGCTGATCGGCGAAATCCGTGACCGCGAGACCATGGAGCATG
CGCTGGCCTTCGCCGAAACCGGGCATCTGGTGCTGTCGACGTTGCACGCCAACAACGCCAATCAGGCGCTGGACCGGATC
ATCAATTTCTTTCCCGAAGAGCGCCGCCCGCAATTGCTGCATGCCTTGGGCAACCACCTCAAGGCGTTCGTCTCCCAGCG
TCTGGTGCGAACCCGGGACGGTCAGCGACGGGCCGCCGCCGAGGTGATGCTCGGTACGCCGACGATTGCCGACCTGATCC
GGCGCAATGACTTTGGCGAGCTGAAAACCATCATGGAGAAATCGGCGGAACTGGGCATGCAGACCTTTGACGGTGCACTG
TTCGCGCTGGTGGCGGAAGGAGTGATCGATGAAGACGAGGCCCTGAAAAATGCTGATTCGGTGAATAACCTGCGCCTGCG
TCTGAAGCTGCACGCCGATACCATGCCGTCCCCACCGCCATCGACCGGCGAATGGGGACTGATGGACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (59-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.338	96.206	0.542
pilU	Acinetobacter baylyi ADP1	53.409	95.393	0.509
pilU	Vibrio cholerae strain A1552	50.286	94.851	0.477
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	41.141	90.244	0.371
pilT	Vibrio cholerae strain A1552	41.141	90.244	0.371
pilT	Pseudomonas stutzeri DSM 10701	39.535	93.225	0.369
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	39.823	91.87	0.366
pilT	Pseudomonas aeruginosa PAK	39.244	93.225	0.366
pilT	Legionella pneumophila strain Lp02	39.82	90.515	0.36
pilT	Legionella pneumophila strain ERS1305867	39.82	90.515	0.36