Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OTS06_RS20350 Genome accession   NZ_CP113533
Coordinates   4338295..4339536 (+) Length   413 a.a.
NCBI ID   WP_324019719.1    Uniprot ID   -
Organism   Aeromonas hydrophila strain SHSK47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4333295..4344536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTS06_RS20325 ampD 4333629..4334201 (-) 573 WP_324019715.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OTS06_RS20330 - 4334348..4334818 (+) 471 WP_282464816.1 retropepsin-like aspartic protease -
  OTS06_RS20335 nadC 4334824..4335681 (+) 858 WP_282464815.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OTS06_RS20340 - 4336004..4336468 (+) 465 WP_139748843.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OTS06_RS20345 pilB 4336473..4338179 (+) 1707 WP_324019718.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  OTS06_RS20350 pilC 4338295..4339536 (+) 1242 WP_324019719.1 type II secretion system F family protein Machinery gene
  OTS06_RS20355 pilD 4339559..4340431 (+) 873 WP_324019720.1 A24 family peptidase Machinery gene
  OTS06_RS20360 coaE 4340451..4341065 (+) 615 WP_324019722.1 dephospho-CoA kinase -
  OTS06_RS20365 zapD 4341103..4341825 (+) 723 WP_024945431.1 cell division protein ZapD -
  OTS06_RS20370 yacG 4341835..4342029 (+) 195 WP_005305661.1 DNA gyrase inhibitor YacG -
  OTS06_RS20375 mutT 4342090..4342503 (-) 414 WP_016352173.1 8-oxo-dGTP diphosphatase MutT -
  OTS06_RS20380 - 4342512..4343696 (-) 1185 WP_346814951.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45438.58 Da        Isoelectric Point: 9.8637

>NTDB_id=762826 OTS06_RS20350 WP_324019719.1 4338295..4339536(+) (pilC) [Aeromonas hydrophila strain SHSK47]
MATLTQKQNTPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKVKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIA
LAIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=762826 OTS06_RS20350 WP_324019719.1 4338295..4339536(+) (pilC) [Aeromonas hydrophila strain SHSK47]
ATGGCAACGCTAACCCAGAAACAGAATACCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTAAATCGCAAGGGCCA
GAAGGTCTCCGGCGAATTGCAGGCCGACAGCATCAACACGGTCAAGGCAGAGCTGCGCAAACAGGGTGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTTTTCTCCAAGGGCGGCGCCAAGGTCAAGCCGATGGACATCGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGTGTACCTCTGGTCCAGAGCCTGCAAATCATCGCTCGCAGCCACGAGAAAGCGGC
CATGCGCGAGCTCATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACGCCTATGTCCGAGGCACTGCGCCGCCATCCCC
GTCACTTTGACGATCTCTACTGCGATCTGGTGGAGGCTGGCGAACAATCCGGCGCCCTGGAGACCATCTACGATCGCATC
GCCACCTATCGCGAGAAATCGGAAGCCCTCAAGTCCAAGATCAAGAAAGCCATGTTCTACCCCACCATGGTCATCCTGGT
GGCCATTGTCGTTACCTCCATCCTGCTGCTGTTCGTCATTCCTCAGTTCGAGGACATCTTCAAGAGCTTTGGTGCCGAGT
TGCCTATCTTCACCCAGTTCGTCATCGGCATCTCCCGTTTCATGCAGAACTGGTGGTATGTGATCTTTGGCGGCATAGCT
CTCGCCATCTTTCTCTACGTGCGCGCCTGGCGCGCCTCCCAGAAGGTCAAGGACAACACCGACAAGTTCATACTGACCAT
CCCCGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGTTTCGCCCGCACCCTCTCCACTACCTTTTCCGCCGGTA
TCCCGCTGGTGGATGCCTTGGTCTCTGCGGCAGGTGCCTCCGGCAACTATGTCTACCGCACTGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTGTTCCCGGACATGGTGATCCAGATGGT
GATGATCGGCGAGGAGTCTGGCGCCATCGATGATATGCTCTCCAAGGTTGCCACCATCTTCGAGCAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTTGGCGGCATGGTGGTCGCC
ATGTATCTGCCCATCTTCAAACTGGGGTCGGTGATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.071

95.884

0.547
  pilC Acinetobacter baumannii D1279779

54.25

96.852

0.525
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

51.111

98.063

0.501
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

46.599

96.126

0.448
  pilG Neisseria gonorrhoeae MS11

40

98.063

0.392
  pilG Neisseria meningitidis 44/76-A

39.753

98.063

0.39
  pilC Thermus thermophilus HB27

37.75

96.852

0.366