Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OU800_RS04080 Genome accession   NZ_CP113519
Coordinates   898834..900051 (-) Length   405 a.a.
NCBI ID   WP_268181383.1    Uniprot ID   -
Organism   Pseudomonas sp. GOM7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 893834..905051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU800_RS04060 (OU800_04060) - 895008..895427 (+) 420 WP_268181376.1 hypothetical protein -
  OU800_RS04065 (OU800_04065) - 895454..896266 (+) 813 WP_268181377.1 YdcF family protein -
  OU800_RS04070 (OU800_04070) lnt 896345..897868 (-) 1524 WP_268181379.1 apolipoprotein N-acyltransferase -
  OU800_RS04075 (OU800_04075) pilD 897964..898833 (-) 870 WP_268181381.1 A24 family peptidase Machinery gene
  OU800_RS04080 (OU800_04080) pilC 898834..900051 (-) 1218 WP_268181383.1 type II secretion system F family protein Machinery gene
  OU800_RS04085 (OU800_04085) pilB 900054..901757 (-) 1704 WP_268181385.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OU800_RS04090 (OU800_04090) - 901980..902474 (+) 495 WP_268181386.1 pilin -
  OU800_RS04095 (OU800_04095) tfpZ 902628..903359 (+) 732 WP_268181387.1 TfpX/TfpZ family type IV pilin accessory protein -
  OU800_RS04100 (OU800_04100) nadC 903679..904527 (-) 849 WP_268181388.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44035.76 Da        Isoelectric Point: 9.8474

>NTDB_id=762673 OU800_RS04080 WP_268181383.1 898834..900051(-) (pilC) [Pseudomonas sp. GOM7]
MAAKALKTSVFTWEGKNKSGAVVKGEINGQNPSLVKAQLRKQGINPTKVRKKSSISFGGGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIAEGFENPNMRKLVDEVKQEVAAGNSFAASLRKKPQYFDELYCNLVESGEQAGALENLLDRIATYKEKT
EALKAKIKKAMNYPIAVVVVAIIVSAILLIKVVPQFESVFANFGAELPAFTLMVIGISQFLQEWWFIFLIGIFAAAFAFK
EAMKRSQKFRDSVDRTVLKLPIIGDILYKSAVARFARTLSTTFAAGVPLVDALDSVSGATGNVVFKTATNKIKADVSTGM
QLNFSMKTTGTFPSMAVQMTAIGEESGSLDEMLDKVASFYEEEVDNMVDGLTSLMEPIIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=762673 OU800_RS04080 WP_268181383.1 898834..900051(-) (pilC) [Pseudomonas sp. GOM7]
ATGGCGGCAAAAGCTCTGAAAACCAGCGTATTCACCTGGGAAGGCAAGAACAAAAGCGGCGCGGTCGTCAAAGGCGAGAT
CAACGGGCAGAACCCGTCCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCAACCCAACCAAGGTGCGCAAGAAATCGA
GCATTTCCTTCGGCGGTGGCAAGAAGATCAAGCCCATGGACATCGCCCTGTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCCTTGCTGCAGTCCTTCGACATCATTGCCGAAGGTTTCGAGAACCCAAATATGCGCAAGCTGGTGGACGA
GGTGAAGCAGGAAGTCGCCGCCGGTAACAGCTTCGCCGCCTCGCTGCGTAAGAAGCCACAGTATTTCGACGAGCTGTACT
GCAACCTGGTGGAGTCCGGTGAACAAGCCGGCGCACTGGAAAACCTGCTGGACCGTATCGCCACCTACAAGGAAAAGACC
GAAGCACTCAAGGCCAAGATCAAGAAGGCGATGAACTACCCCATTGCCGTGGTGGTGGTGGCGATCATCGTCTCCGCCAT
CCTGCTGATCAAGGTAGTGCCTCAGTTCGAGTCGGTCTTCGCCAACTTCGGCGCCGAGTTGCCCGCCTTCACCTTGATGG
TAATCGGGATATCCCAGTTCCTGCAGGAATGGTGGTTCATCTTCCTGATCGGGATTTTCGCGGCGGCCTTTGCCTTCAAG
GAAGCAATGAAACGCTCGCAGAAATTCCGTGACTCGGTGGATCGCACCGTACTCAAGCTCCCCATCATCGGCGACATTCT
CTACAAGTCGGCCGTAGCACGCTTCGCCCGCACCCTCTCCACCACCTTCGCCGCCGGCGTGCCACTGGTGGATGCGCTGG
ATTCCGTCTCCGGCGCCACCGGCAACGTGGTGTTCAAGACCGCGACCAACAAGATCAAGGCAGACGTGTCCACCGGCATG
CAACTCAACTTCTCGATGAAGACCACCGGCACCTTCCCCTCCATGGCCGTGCAGATGACCGCTATCGGCGAGGAGTCCGG
CTCGCTAGACGAGATGCTCGACAAGGTCGCCTCCTTCTATGAAGAGGAAGTGGACAATATGGTCGATGGCCTCACCAGTC
TGATGGAGCCGATCATCATGGCCGTGCTCGGGGTACTGGTTGGCGGCTTGATCATTGCCATGTACCTGCCGATATTCCAA
CTGGGCTCCGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

81.728

100

0.817
  pilC Acinetobacter baylyi ADP1

61.029

100

0.615
  pilC Acinetobacter baumannii D1279779

60.644

99.753

0.605
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria gonorrhoeae MS11

44.776

99.259

0.444
  pilG Neisseria meningitidis 44/76-A

44.776

99.259

0.444
  pilC Vibrio cholerae strain A1552

42.365

100

0.425
  pilC Vibrio campbellii strain DS40M4

41.562

98.025

0.407
  pilC Thermus thermophilus HB27

36.228

99.506

0.36