Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   OU800_RS04075 Genome accession   NZ_CP113519
Coordinates   897964..898833 (-) Length   289 a.a.
NCBI ID   WP_268181381.1    Uniprot ID   -
Organism   Pseudomonas sp. GOM7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 892964..903833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU800_RS04060 (OU800_04060) - 895008..895427 (+) 420 WP_268181376.1 hypothetical protein -
  OU800_RS04065 (OU800_04065) - 895454..896266 (+) 813 WP_268181377.1 YdcF family protein -
  OU800_RS04070 (OU800_04070) lnt 896345..897868 (-) 1524 WP_268181379.1 apolipoprotein N-acyltransferase -
  OU800_RS04075 (OU800_04075) pilD 897964..898833 (-) 870 WP_268181381.1 A24 family peptidase Machinery gene
  OU800_RS04080 (OU800_04080) pilC 898834..900051 (-) 1218 WP_268181383.1 type II secretion system F family protein Machinery gene
  OU800_RS04085 (OU800_04085) pilB 900054..901757 (-) 1704 WP_268181385.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OU800_RS04090 (OU800_04090) - 901980..902474 (+) 495 WP_268181386.1 pilin -
  OU800_RS04095 (OU800_04095) tfpZ 902628..903359 (+) 732 WP_268181387.1 TfpX/TfpZ family type IV pilin accessory protein -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31901.89 Da        Isoelectric Point: 6.8137

>NTDB_id=762672 OU800_RS04075 WP_268181381.1 897964..898833(-) (pilD) [Pseudomonas sp. GOM7]
MLVLDFLASHTLAFACCALLLGLLIGSFLNVVVYRLPLMLQRDWREQAREILELPAEPRQATFNLILPNSSCPYCGHEIR
PWENVPLLSYLALRGKCSNCKAAISKRYPIVELACGLLSAYIAWHFGFTWQAGAMLLLSWGLLAMSLIDADHQILPDVLV
LPLLWLGLMVNHFGLFTSLEDALWGAIAGYLSLWSVYWLFKLITGKEGMGHGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVLGVILLRLRGSDTSTPIPFGPYLAIAGWIALLWGDAITSSYLHFAGF

Nucleotide


Download         Length: 870 bp        

>NTDB_id=762672 OU800_RS04075 WP_268181381.1 897964..898833(-) (pilD) [Pseudomonas sp. GOM7]
ATGCTGGTGCTTGATTTTCTGGCCAGCCACACGCTGGCCTTCGCTTGCTGCGCCCTGCTGCTGGGCCTGTTGATCGGCAG
CTTTCTCAATGTGGTGGTCTACCGCCTGCCGCTGATGTTGCAGCGAGATTGGCGGGAGCAGGCACGCGAGATACTGGAGC
TGCCTGCCGAACCCAGGCAGGCCACCTTCAATCTGATCCTGCCCAATTCGAGCTGCCCGTACTGCGGTCATGAAATTCGC
CCTTGGGAGAACGTTCCGCTGCTCAGCTATCTGGCGCTGCGCGGTAAGTGCTCCAACTGCAAGGCGGCCATTAGCAAGCG
TTACCCCATTGTGGAGCTGGCCTGCGGCCTGCTTTCGGCTTATATCGCCTGGCATTTCGGTTTCACCTGGCAGGCGGGTG
CCATGCTGCTATTGAGCTGGGGCCTGCTGGCGATGAGCCTTATCGACGCCGACCACCAGATCCTGCCGGACGTGCTGGTA
CTGCCTCTGCTCTGGCTCGGCCTGATGGTCAACCACTTCGGCCTGTTCACCAGCCTGGAAGACGCCCTGTGGGGCGCCAT
TGCCGGTTATCTGAGCCTGTGGTCGGTGTACTGGTTGTTCAAGCTGATCACCGGTAAGGAGGGCATGGGTCACGGCGACT
TCAAGCTGCTGGCCATGATCGGCGCCTGGGGTGGCTGGCAGGTGCTGCCGCTGACCATCCTGCTGTCGTCCCTGGTCGGT
GCGGTTCTGGGGGTGATCCTTCTGCGCCTGCGTGGCAGCGACACCAGCACGCCCATCCCCTTCGGCCCCTACCTGGCCAT
CGCCGGCTGGATCGCCCTGCTCTGGGGTGATGCCATCACCTCCAGCTATCTGCACTTCGCCGGGTTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(20-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.311

94.464

0.522
  pilD Vibrio campbellii strain DS40M4

51.648

94.464

0.488
  pilD Acinetobacter nosocomialis M2

49.296

98.27

0.484
  pilD Acinetobacter baumannii D1279779

48.944

98.27

0.481
  pilD Neisseria gonorrhoeae MS11

47.529

91.003

0.433