Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OQG81_RS00905 Genome accession   NZ_CP113440
Coordinates   132579..132974 (+) Length   131 a.a.
NCBI ID   WP_014293786.1    Uniprot ID   A0A1C3SMI5
Organism   Streptococcus macedonicus strain E37     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 127579..137974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OQG81_RS00880 (OQG81_00880) proC 128895..129665 (-) 771 WP_014293782.1 pyrroline-5-carboxylate reductase -
  OQG81_RS00885 (OQG81_00885) pepA 129726..130793 (-) 1068 WP_014293783.1 glutamyl aminopeptidase -
  OQG81_RS00890 (OQG81_00890) - 130911..131204 (+) 294 WP_039670370.1 DUF4651 domain-containing protein -
  OQG81_RS00895 (OQG81_00895) - 131197..131514 (+) 318 WP_009853246.1 thioredoxin family protein -
  OQG81_RS00900 (OQG81_00900) ytpR 131523..132149 (+) 627 WP_014293785.1 YtpR family tRNA-binding protein -
  OQG81_RS12145 - 132240..132458 (-) 219 WP_081498561.1 IS3 family transposase -
  OQG81_RS00905 (OQG81_00905) ssbA 132579..132974 (+) 396 WP_014293786.1 single-stranded DNA-binding protein Machinery gene
  OQG81_RS00910 (OQG81_00910) - 133124..134167 (+) 1044 WP_014293787.1 YeeE/YedE family protein -
  OQG81_RS00915 (OQG81_00915) - 134170..134397 (+) 228 WP_014293788.1 sulfurtransferase TusA family protein -
  OQG81_RS00920 (OQG81_00920) - 134525..135331 (+) 807 WP_014293789.1 Cof-type HAD-IIB family hydrolase -
  OQG81_RS00925 (OQG81_00925) - 135485..136450 (+) 966 WP_265643908.1 sugar ABC transporter substrate-binding protein -
  OQG81_RS00930 (OQG81_00930) - 136441..137766 (+) 1326 WP_372702949.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14951.90 Da        Isoelectric Point: 5.2829

>NTDB_id=762272 OQG81_RS00905 WP_014293786.1 132579..132974(+) (ssbA) [Streptococcus macedonicus strain E37]
MYNKVIMIGRLTAQPELVTTSNEKSVTRVTLAVNRRFKSQNGERETDFISVVVWGRLAETLVSYAGKGSLISIDGELRTR
KYEKDGHTNYVTEVLCHSFQLLESRAQRDMRENNVANDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=762272 OQG81_RS00905 WP_014293786.1 132579..132974(+) (ssbA) [Streptococcus macedonicus strain E37]
ATGTACAATAAAGTTATTATGATTGGTCGTTTGACAGCGCAGCCTGAGCTTGTGACGACTTCAAATGAGAAATCTGTTAC
ACGTGTAACACTAGCAGTCAACCGCCGTTTTAAATCGCAAAATGGTGAGCGTGAGACTGATTTTATTTCAGTTGTGGTTT
GGGGACGTTTGGCAGAAACTCTTGTTTCTTATGCTGGAAAAGGAAGTCTGATTTCGATTGATGGCGAGCTTCGCACACGT
AAATATGAAAAAGATGGTCACACGAATTATGTGACAGAAGTGCTTTGCCATTCTTTCCAACTTTTAGAAAGCCGTGCCCA
ACGTGACATGCGAGAAAATAATGTGGCAAACGACCTCGCTGATTTAGTTTTGGAAGAGGAAGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C3SMI5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

79.389

100

0.794
  ssbB/cilA Streptococcus pneumoniae R6

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae Rx1

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae D39

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

75.573

100

0.756
  ssbB Streptococcus sobrinus strain NIDR 6715-7

75.573

100

0.756
  ssbB/cilA Streptococcus mitis NCTC 12261

74.809

100

0.748
  ssbB/cilA Streptococcus mitis SK321

74.809

100

0.748
  ssbB Lactococcus lactis subsp. cremoris KW2

60.526

87.023

0.527
  ssbA Bacillus subtilis subsp. subtilis str. 168

50

80.916

0.405
  ssb Latilactobacillus sakei subsp. sakei 23K

44.444

89.313

0.397