Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA2   Type   Machinery gene
Locus tag   OXA90_RS09625 Genome accession   NZ_CP113437
Coordinates   2142095..2142508 (-) Length   137 a.a.
NCBI ID   WP_011214167.1    Uniprot ID   -
Organism   Legionella pneumophila strain PATHC007     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2137095..2147508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OXA90_RS09615 (OXA90_09615) letS 2138024..2140756 (+) 2733 WP_011214165.1 two-component system sensor histidine kinase LetS Regulator
  OXA90_RS09620 (OXA90_09620) - 2140854..2142098 (+) 1245 WP_011214166.1 6-phosphofructokinase -
  OXA90_RS09625 (OXA90_09625) pilA2 2142095..2142508 (-) 414 WP_011214167.1 pilin Machinery gene
  OXA90_RS09630 (OXA90_09630) pilA2 2142702..2143112 (-) 411 WP_011214168.1 pilin Machinery gene
  OXA90_RS09635 (OXA90_09635) - 2143415..2143732 (+) 318 WP_011214169.1 BolA family protein -
  OXA90_RS09640 (OXA90_09640) - 2143807..2145228 (+) 1422 WP_011214170.1 APC family permease -
  OXA90_RS09645 (OXA90_09645) - 2145334..2146764 (-) 1431 WP_011214171.1 cellulase family glycosylhydrolase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14493.85 Da        Isoelectric Point: 6.2016

>NTDB_id=762162 OXA90_RS09625 WP_011214167.1 2142095..2142508(-) (pilA2) [Legionella pneumophila strain PATHC007]
MRTKGFTLIELMIVAAILGILVAIAMPAYQDYTIRARVVEGLEMASAAKLAVVETSLIDNTLPANQADTGYTSPAPTINV
ASIAIGNQGIITITYTANAGNGTITMVPTLDATNRILTWDCTGGTLISKYRPAYCRP

Nucleotide


Download         Length: 414 bp        

>NTDB_id=762162 OXA90_RS09625 WP_011214167.1 2142095..2142508(-) (pilA2) [Legionella pneumophila strain PATHC007]
ATGAGAACGAAAGGATTTACTTTAATCGAGCTGATGATCGTTGCCGCTATACTTGGGATTCTGGTTGCCATCGCAATGCC
AGCCTATCAAGACTATACCATCAGAGCACGGGTGGTTGAAGGATTGGAAATGGCTTCGGCCGCTAAATTAGCTGTTGTTG
AAACGAGTTTAATTGATAACACTTTGCCAGCAAATCAGGCAGATACGGGTTATACCAGTCCAGCCCCAACAATTAATGTA
GCCTCTATAGCCATTGGTAATCAAGGCATTATTACCATTACCTACACTGCAAACGCAGGTAATGGCACTATTACAATGGT
TCCCACCCTGGATGCTACTAACAGAATACTCACTTGGGATTGCACTGGCGGTACCCTGATTAGTAAATATCGTCCAGCCT
ACTGCCGCCCTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-136)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA2 Legionella pneumophila str. Paris

72.993

100

0.73
  pilA2 Legionella pneumophila strain ERS1305867

72.263

100

0.723
  pilA Ralstonia pseudosolanacearum GMI1000

45.399

100

0.54
  comP Acinetobacter baylyi ADP1

45.517

100

0.482
  pilA/pilA1 Eikenella corrodens VA1

36.184

100

0.401
  pilA/pilAI Pseudomonas stutzeri DSM 10701

37.41

100

0.38
  pilA/pilAII Pseudomonas stutzeri DSM 10701

37.41

100

0.38
  pilA Vibrio cholerae strain A1552

34.228

100

0.372
  pilA Vibrio cholerae C6706

34.228

100

0.372
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

34.228

100

0.372