Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OU419_RS05060 Genome accession   NZ_CP113432
Coordinates   1062325..1063542 (-) Length   405 a.a.
NCBI ID   WP_254471085.1    Uniprot ID   -
Organism   Pseudomonas triclosanedens strain ZM23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1057325..1068542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OU419_RS05020 (OU419_05020) - 1057996..1058166 (-) 171 WP_254471092.1 DUF3094 family protein -
  OU419_RS05025 (OU419_05025) - 1058250..1058879 (-) 630 WP_254471091.1 DUF1780 domain-containing protein -
  OU419_RS05030 (OU419_05030) - 1059055..1059522 (+) 468 WP_408004922.1 FAD/FMN-containing dehydrogenase -
  OU419_RS05035 (OU419_05035) - 1059519..1060208 (+) 690 WP_254471090.1 energy-coupling factor ABC transporter permease -
  OU419_RS05040 (OU419_05040) - 1060315..1060530 (+) 216 WP_254471089.1 hypothetical protein -
  OU419_RS05045 (OU419_05045) yacG 1060571..1060777 (-) 207 WP_254471088.1 DNA gyrase inhibitor YacG -
  OU419_RS05050 (OU419_05050) coaE 1060774..1061382 (-) 609 WP_254471087.1 dephospho-CoA kinase -
  OU419_RS05055 (OU419_05055) pilD 1061449..1062321 (-) 873 WP_254471086.1 A24 family peptidase Machinery gene
  OU419_RS05060 (OU419_05060) pilC 1062325..1063542 (-) 1218 WP_254471085.1 type II secretion system F family protein Machinery gene
  OU419_RS05065 (OU419_05065) pilB 1063546..1065249 (-) 1704 WP_254471084.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OU419_RS05070 (OU419_05070) - 1065477..1065953 (+) 477 WP_254471083.1 pilin -
  OU419_RS05075 (OU419_05075) - 1066031..1067758 (+) 1728 WP_254471082.1 phosphoethanolamine transferase -
  OU419_RS05080 (OU419_05080) - 1067728..1068339 (+) 612 WP_254471081.1 fused MFS/spermidine synthase -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44375.08 Da        Isoelectric Point: 9.7880

>NTDB_id=761948 OU419_RS05060 WP_254471085.1 1062325..1063542(-) (pilC) [Pseudomonas triclosanedens strain ZM23]
MAEKALKTSVFLWEGTDRKGGKIKGELSGTNQMLVKAQLRKQGINPTKVRKKGVSLFSAGKKIKPMDIALFTRQMSTMMA
SGVPLLQSFDIIGEGFDNPNMRKLVEEVKNEVAAGNSLANSLRKKPQYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVIIVAVIVSAILLIKVVPQFQSVFSNFGAELPAFTMMVIHLSEALQEWWYIVLIGLVAFVFGFK
EFHKRSEKFRDAVDRSILKLPIVGQILYKSAIARYARTLSTTFAAGVPLVEALDSVAGATGNVVFRNAVQRIKQDVSSGT
QLNFSMRTTGVFPSMAIQMAAIGEESGSLDSMLGKVASYYEEEVDNAVDNLTTLMEPMIMAILGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=761948 OU419_RS05060 WP_254471085.1 1062325..1063542(-) (pilC) [Pseudomonas triclosanedens strain ZM23]
ATGGCGGAAAAAGCATTAAAAACGAGTGTTTTCCTGTGGGAAGGCACCGATAGAAAGGGCGGGAAGATCAAAGGGGAGCT
TTCCGGCACCAACCAGATGCTGGTCAAGGCCCAGCTTCGCAAGCAGGGCATCAATCCGACCAAGGTACGCAAGAAGGGGG
TGTCCCTCTTCAGCGCGGGCAAGAAGATCAAGCCGATGGACATCGCCCTGTTCACCCGGCAGATGTCCACTATGATGGCC
TCCGGCGTACCGTTGCTGCAGTCGTTCGACATCATTGGCGAGGGCTTCGACAACCCGAACATGCGCAAGCTGGTCGAAGA
GGTCAAGAACGAGGTAGCCGCCGGTAACAGTCTGGCGAACTCGCTGCGCAAGAAGCCCCAGTATTTCGACGACCTGTATT
GCAACCTGGTGGACGCGGGCGAACAGTCCGGTGCACTGGAAACGCTGCTCGACCGGGTAGCGACCTACAAGGAAAAGACC
GAGTCGCTGAAGGCGAAGATCAAGAAGGCGATGACCTACCCCATTGCGGTGATCATCGTCGCCGTGATCGTTTCGGCCAT
CCTGCTGATCAAAGTGGTTCCCCAGTTCCAGTCGGTATTCTCCAACTTCGGCGCCGAACTTCCCGCCTTCACCATGATGG
TCATTCACCTCTCCGAGGCATTGCAGGAGTGGTGGTACATCGTGCTGATCGGCCTTGTGGCGTTCGTCTTTGGATTCAAG
GAATTTCACAAGCGCTCCGAGAAGTTCCGCGACGCAGTCGACCGCTCGATCCTGAAGCTGCCCATCGTCGGCCAGATTCT
CTACAAGTCCGCCATCGCTCGTTATGCGCGCACGCTTTCCACGACGTTCGCCGCCGGCGTACCACTGGTGGAAGCACTGG
ATTCCGTGGCCGGCGCCACTGGCAACGTGGTCTTCCGCAATGCCGTCCAGCGTATCAAGCAGGACGTTTCCTCCGGTACA
CAACTGAACTTCTCCATGCGCACCACTGGCGTCTTCCCGAGCATGGCCATTCAGATGGCGGCTATCGGTGAAGAGTCCGG
CTCGCTGGACTCGATGCTGGGCAAGGTAGCCAGCTACTACGAAGAAGAAGTCGATAACGCCGTGGATAACCTGACCACCC
TGATGGAGCCCATGATCATGGCCATCCTCGGTGTGCTGGTCGGCGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAA
CTGGGCAACGTCGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

80.494

100

0.805
  pilC Acinetobacter baylyi ADP1

59.606

100

0.598
  pilC Acinetobacter baumannii D1279779

59.753

100

0.598
  pilC Legionella pneumophila strain ERS1305867

54.545

97.778

0.533
  pilG Neisseria gonorrhoeae MS11

45.025

99.259

0.447
  pilG Neisseria meningitidis 44/76-A

45.025

99.259

0.447
  pilC Vibrio cholerae strain A1552

41.481

100

0.415
  pilC Vibrio campbellii strain DS40M4

40.657

97.778

0.398
  pilC Thermus thermophilus HB27

36.409

99.012

0.36