Detailed information NTG0761947

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OU419_RS05055
• Genome accession: NZ_CP113432
• Coordinates: 1061449..1062321 (-)
• Length: 290 a.a.
• NCBI ID: WP_254471086.1
• Uniprot ID: -
• Organism: Pseudomonas triclosanedens strain ZM23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1056449..1067321

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OU419_RS05015 (OU419_05015)	-	1056644..1057942 (-)	1299	WP_254471093.1	NAD(P)/FAD-dependent oxidoreductase	-
OU419_RS05020 (OU419_05020)	-	1057996..1058166 (-)	171	WP_254471092.1	DUF3094 family protein	-
OU419_RS05025 (OU419_05025)	-	1058250..1058879 (-)	630	WP_254471091.1	DUF1780 domain-containing protein	-
OU419_RS05030 (OU419_05030)	-	1059055..1059522 (+)	468	WP_408004922.1	FAD/FMN-containing dehydrogenase	-
OU419_RS05035 (OU419_05035)	-	1059519..1060208 (+)	690	WP_254471090.1	energy-coupling factor ABC transporter permease	-
OU419_RS05040 (OU419_05040)	-	1060315..1060530 (+)	216	WP_254471089.1	hypothetical protein	-
OU419_RS05045 (OU419_05045)	yacG	1060571..1060777 (-)	207	WP_254471088.1	DNA gyrase inhibitor YacG	-
OU419_RS05050 (OU419_05050)	coaE	1060774..1061382 (-)	609	WP_254471087.1	dephospho-CoA kinase	-
OU419_RS05055 (OU419_05055)	pilD	1061449..1062321 (-)	873	WP_254471086.1	A24 family peptidase	Machinery gene
OU419_RS05060 (OU419_05060)	pilC	1062325..1063542 (-)	1218	WP_254471085.1	type II secretion system F family protein	Machinery gene
OU419_RS05065 (OU419_05065)	pilB	1063546..1065249 (-)	1704	WP_254471084.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OU419_RS05070 (OU419_05070)	-	1065477..1065953 (+)	477	WP_254471083.1	pilin	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31839.78 Da
• Isoelectric Point: 7.3987

>NTDB_id=761947 OU419_RS05055 WP_254471086.1 1061449..1062321(-) (pilD) [Pseudomonas triclosanedens strain ZM23]
MPVTEFLASTPLAFVLCAALLGLLVGSFLNVVIHRLPQMLKLEWQQQAREALDLPEPGPRTTYNLVLPHSQCPHCGHQIR
AWENIPVLSYLALRGKCSSCKAPISKRYPLIEVACALLSGFIAWHYGFGWQAGAMLLLGWGLLAMSMIDVDHQLLPDVLV
LPLLWVGLIANHFGLFTSLGDALWGAVIGYMSLWSVYWLFKLVTGKEGMGYGDFKLLAMIGAWGGWQVLPLTILLSSLVG
AVLGVITLRLRNAETSTPIPFGPYLAIAGWIALLWGDQITATYLQFAGFH

Nucleotide

• Length: 873 bp

>NTDB_id=761947 OU419_RS05055 WP_254471086.1 1061449..1062321(-) (pilD) [Pseudomonas triclosanedens strain ZM23]
ATGCCGGTAACAGAGTTCCTGGCCAGCACCCCGCTGGCCTTTGTTTTATGCGCCGCCCTCCTCGGTCTGCTGGTGGGCAG
TTTCCTCAACGTGGTCATCCATCGCCTGCCGCAGATGCTGAAGCTGGAGTGGCAACAACAGGCCCGTGAAGCGCTGGACC
TGCCTGAACCTGGACCTCGCACCACTTACAACCTGGTCCTGCCGCACTCCCAGTGCCCGCATTGCGGACACCAGATTCGC
GCCTGGGAAAACATTCCGGTTCTCAGCTATCTGGCATTACGCGGCAAGTGCTCATCCTGCAAGGCACCGATCAGCAAGCG
TTACCCACTGATCGAAGTTGCCTGCGCCCTGCTGTCCGGCTTCATCGCCTGGCATTACGGTTTCGGTTGGCAGGCCGGCG
CGATGCTGCTGCTCGGCTGGGGGCTGCTGGCGATGAGCATGATCGATGTCGATCACCAATTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTATGGGTCGGGCTGATCGCCAACCATTTCGGCCTGTTCACCAGCCTAGGCGATGCCCTGTGGGGCGCAGT
GATCGGCTACATGAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGGTCACCGGTAAGGAAGGCATGGGCTACGGCGACT
TCAAGTTGCTGGCCATGATCGGCGCCTGGGGCGGCTGGCAAGTACTGCCGCTGACCATCCTGCTGTCGTCGCTGGTGGGT
GCGGTGCTGGGGGTGATCACCCTGCGACTGCGCAACGCGGAAACCAGTACGCCGATCCCCTTTGGCCCCTATCTGGCCAT
CGCCGGCTGGATTGCGCTGCTCTGGGGTGATCAAATAACCGCGACCTATCTGCAGTTCGCCGGTTTCCACTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.634	97.931	0.545
pilD	Vibrio campbellii strain DS40M4	53.191	97.241	0.517
pilD	Acinetobacter baumannii D1279779	51.636	94.828	0.49
pilD	Acinetobacter nosocomialis M2	50.916	94.138	0.479
pilD	Neisseria gonorrhoeae MS11	49.43	90.69	0.448