Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OSV15_RS05180 Genome accession   NZ_CP113257
Coordinates   1077089..1078306 (+) Length   405 a.a.
NCBI ID   WP_267932282.1    Uniprot ID   -
Organism   Stutzerimonas frequens strain TF18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1072089..1083306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OSV15_RS05165 (OSV15_05165) cysN 1072104..1074002 (+) 1899 WP_267932280.1 sulfate adenylyltransferase subunit CysN -
  OSV15_RS05170 (OSV15_05170) pilA 1074591..1075073 (-) 483 WP_042928458.1 pilin Machinery gene
  OSV15_RS05175 (OSV15_05175) pilB 1075384..1077087 (+) 1704 WP_267932281.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OSV15_RS05180 (OSV15_05180) pilC 1077089..1078306 (+) 1218 WP_267932282.1 type II secretion system F family protein Machinery gene
  OSV15_RS05185 (OSV15_05185) pilD 1078309..1079178 (+) 870 WP_267932283.1 prepilin peptidase Machinery gene
  OSV15_RS05190 (OSV15_05190) coaE 1079311..1079919 (+) 609 WP_267932284.1 dephospho-CoA kinase -
  OSV15_RS05195 (OSV15_05195) yacG 1079916..1080113 (+) 198 WP_102840588.1 DNA gyrase inhibitor YacG -
  OSV15_RS05200 (OSV15_05200) - 1080138..1080818 (-) 681 WP_102840589.1 energy-coupling factor ABC transporter permease -
  OSV15_RS05205 (OSV15_05205) - 1080857..1081894 (-) 1038 WP_267932285.1 NADP(H)-dependent aldo-keto reductase -
  OSV15_RS05210 (OSV15_05210) rplM 1082339..1082767 (+) 429 WP_063544471.1 50S ribosomal protein L13 -
  OSV15_RS05215 (OSV15_05215) rpsI 1082782..1083174 (+) 393 WP_013981948.1 30S ribosomal protein S9 -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44105.89 Da        Isoelectric Point: 9.8752

>NTDB_id=761306 OSV15_RS05180 WP_267932282.1 1077089..1078306(+) (pilC) [Stutzerimonas frequens strain TF18]
MAQKAIKTSVFTWEGTNKQGAKIKGELSGISPAMVKAQLRKQGVNPQKVRKKSASLFSAGKKIKPMDIALFTRQMATMMK
AGVPLLQSFDIIGEGFDNPNMRKLVDDLKQEVAAGNSFATALRKKPQYFDDLYCNLVDSGEQSGSLETLLDRVATYKEKT
EALKAKIKKAMNYPIAVVLVAIIVSAILLIKVVPQFQEVFANFGAELPAFTLMVIGLSETLQAWWHLVLLGLFLAAFAFK
TAHGKSERFRDWFDRLLLKVPIVGEILYKSAVARFARTLSTTFAAGVPLVDALDSVAGATGNVVFRNATMKVKSDVSSGM
QLNFSMRTTGTFPTMAVQMAAIGEESGSLDEMLAKVATFYEDEVDNMVDGLTSLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=761306 OSV15_RS05180 WP_267932282.1 1077089..1078306(+) (pilC) [Stutzerimonas frequens strain TF18]
ATGGCGCAGAAAGCGATTAAAACCAGTGTGTTCACCTGGGAAGGCACCAACAAGCAGGGTGCGAAGATCAAGGGCGAGCT
AAGCGGAATCAGCCCTGCGATGGTCAAGGCGCAGCTGCGTAAGCAGGGCGTAAACCCTCAGAAGGTGCGTAAGAAGTCGG
CGTCGCTGTTCAGTGCTGGCAAGAAGATCAAGCCGATGGATATCGCCTTGTTCACTCGTCAGATGGCGACCATGATGAAG
GCCGGTGTGCCGCTGCTGCAGTCATTCGACATTATTGGCGAGGGGTTCGATAACCCGAACATGCGTAAGCTGGTCGATGA
CCTCAAGCAGGAGGTCGCGGCGGGTAACAGCTTCGCCACGGCGTTGCGCAAGAAGCCACAGTACTTTGACGATCTCTACT
GCAACCTGGTGGACTCGGGCGAGCAGTCTGGCTCCTTGGAGACGTTGCTCGATCGCGTTGCGACCTACAAGGAAAAAACC
GAGGCTCTCAAGGCAAAGATCAAGAAGGCGATGAATTATCCGATCGCCGTCGTACTCGTCGCGATCATTGTTTCCGCGAT
CCTGTTGATCAAGGTCGTTCCTCAGTTTCAGGAAGTTTTTGCCAACTTCGGCGCGGAGCTTCCAGCATTTACGCTCATGG
TCATTGGTCTGTCCGAAACCCTGCAGGCCTGGTGGCACTTGGTCCTGCTAGGGTTGTTCCTCGCTGCCTTTGCATTCAAG
ACCGCCCATGGTAAATCAGAGCGGTTTCGCGACTGGTTCGATCGCTTGTTGCTGAAGGTGCCGATCGTCGGCGAGATTCT
TTACAAATCGGCAGTGGCACGATTCGCTCGGACCTTGTCCACGACATTCGCTGCGGGTGTGCCTTTGGTGGACGCTCTGG
ATTCGGTTGCCGGAGCGACCGGTAATGTGGTGTTCCGCAATGCAACGATGAAAGTCAAAAGCGACGTATCGTCCGGTATG
CAGCTGAACTTCTCCATGCGCACCACCGGTACCTTTCCAACCATGGCGGTACAGATGGCGGCGATTGGCGAGGAGTCCGG
CTCGCTTGACGAGATGCTGGCCAAGGTGGCGACCTTTTACGAGGATGAGGTCGACAACATGGTTGATGGTCTGACAAGCC
TGATGGAGCCCATGATCATGGCGGTCTTGGGGGTTCTGGTCGGTGGCTTGATCATTGCCATGTATCTCCCGATCTTCCAA
CTGGGTTCCGTCGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

90.37

100

0.904
  pilC Acinetobacter baylyi ADP1

59.36

100

0.595
  pilC Acinetobacter baumannii D1279779

58.272

100

0.583
  pilC Legionella pneumophila strain ERS1305867

53.283

97.778

0.521
  pilG Neisseria gonorrhoeae MS11

44.913

99.506

0.447
  pilG Neisseria meningitidis 44/76-A

44.913

99.506

0.447
  pilC Vibrio cholerae strain A1552

43.434

97.778

0.425
  pilC Vibrio campbellii strain DS40M4

41.667

97.778

0.407