Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | OSV15_RS05170 | Genome accession | NZ_CP113257 |
| Coordinates | 1074591..1075073 (-) | Length | 160 a.a. |
| NCBI ID | WP_042928458.1 | Uniprot ID | - |
| Organism | Stutzerimonas frequens strain TF18 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1069591..1080073
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OSV15_RS05155 (OSV15_05155) | - | 1070222..1070980 (+) | 759 | WP_267932279.1 | Nif3-like dinuclear metal center hexameric protein | - |
| OSV15_RS05160 (OSV15_05160) | cysD | 1071174..1072091 (+) | 918 | WP_110777989.1 | sulfate adenylyltransferase subunit CysD | - |
| OSV15_RS05165 (OSV15_05165) | cysN | 1072104..1074002 (+) | 1899 | WP_267932280.1 | sulfate adenylyltransferase subunit CysN | - |
| OSV15_RS05170 (OSV15_05170) | pilA | 1074591..1075073 (-) | 483 | WP_042928458.1 | pilin | Machinery gene |
| OSV15_RS05175 (OSV15_05175) | pilB | 1075384..1077087 (+) | 1704 | WP_267932281.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| OSV15_RS05180 (OSV15_05180) | pilC | 1077089..1078306 (+) | 1218 | WP_267932282.1 | type II secretion system F family protein | Machinery gene |
| OSV15_RS05185 (OSV15_05185) | pilD | 1078309..1079178 (+) | 870 | WP_267932283.1 | prepilin peptidase | Machinery gene |
| OSV15_RS05190 (OSV15_05190) | coaE | 1079311..1079919 (+) | 609 | WP_267932284.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 160 a.a. Molecular weight: 16080.25 Da Isoelectric Point: 8.4800
>NTDB_id=761304 OSV15_RS05170 WP_042928458.1 1074591..1075073(-) (pilA) [Stutzerimonas frequens strain TF18]
MKTQMQKGFTLIELMIVVAIIGILAAVALPAYQDYTTRARVTEGLSLASAAKTTVAENAANGAPFARGYTAPTATDNVTS
VAIAEATGEITITYTNRAGGGTLVLAPRDGGPAGNALAGTATASTVPSQGNITWNCLAAGSTKAGTTGTLQAKFAPSECR
MKTQMQKGFTLIELMIVVAIIGILAAVALPAYQDYTTRARVTEGLSLASAAKTTVAENAANGAPFARGYTAPTATDNVTS
VAIAEATGEITITYTNRAGGGTLVLAPRDGGPAGNALAGTATASTVPSQGNITWNCLAAGSTKAGTTGTLQAKFAPSECR
Nucleotide
Download Length: 483 bp
>NTDB_id=761304 OSV15_RS05170 WP_042928458.1 1074591..1075073(-) (pilA) [Stutzerimonas frequens strain TF18]
ATGAAAACTCAGATGCAGAAGGGTTTTACCCTGATTGAATTGATGATCGTTGTTGCGATCATTGGTATTTTGGCTGCTGT
TGCGCTACCTGCCTATCAAGACTACACAACCCGCGCTCGGGTAACTGAAGGACTCAGCCTTGCCTCTGCCGCAAAAACTA
CCGTGGCGGAGAACGCCGCAAATGGCGCGCCTTTCGCGCGAGGCTACACAGCGCCAACCGCTACGGACAACGTCACCTCT
GTCGCGATTGCAGAAGCAACCGGTGAGATTACCATCACCTATACTAACCGCGCTGGTGGCGGAACATTGGTTTTGGCGCC
GCGCGATGGCGGCCCGGCAGGCAACGCTCTTGCTGGCACGGCAACTGCTTCAACCGTGCCTAGCCAAGGCAACATCACTT
GGAACTGCTTGGCAGCGGGCTCCACTAAAGCCGGCACCACGGGAACTCTCCAGGCCAAGTTCGCGCCCTCGGAATGCCGC
TAA
ATGAAAACTCAGATGCAGAAGGGTTTTACCCTGATTGAATTGATGATCGTTGTTGCGATCATTGGTATTTTGGCTGCTGT
TGCGCTACCTGCCTATCAAGACTACACAACCCGCGCTCGGGTAACTGAAGGACTCAGCCTTGCCTCTGCCGCAAAAACTA
CCGTGGCGGAGAACGCCGCAAATGGCGCGCCTTTCGCGCGAGGCTACACAGCGCCAACCGCTACGGACAACGTCACCTCT
GTCGCGATTGCAGAAGCAACCGGTGAGATTACCATCACCTATACTAACCGCGCTGGTGGCGGAACATTGGTTTTGGCGCC
GCGCGATGGCGGCCCGGCAGGCAACGCTCTTGCTGGCACGGCAACTGCTTCAACCGTGCCTAGCCAAGGCAACATCACTT
GGAACTGCTTGGCAGCGGGCTCCACTAAAGCCGGCACCACGGGAACTCTCCAGGCCAAGTTCGCGCCCTCGGAATGCCGC
TAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Ralstonia pseudosolanacearum GMI1000 |
52.941 |
100 |
0.562 |
| pilA2 | Legionella pneumophila str. Paris |
53.125 |
100 |
0.531 |
| pilA2 | Legionella pneumophila strain ERS1305867 |
52.5 |
100 |
0.525 |
| comP | Acinetobacter baylyi ADP1 |
42.69 |
100 |
0.456 |
| pilE | Neisseria elongata subsp. glycolytica ATCC 29315 |
37.5 |
100 |
0.45 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
38.365 |
99.375 |
0.381 |