Detailed information NTG0761307

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OSV15_RS05185
• Genome accession: NZ_CP113257
• Coordinates: 1078309..1079178 (+)
• Length: 289 a.a.
• NCBI ID: WP_267932283.1
• Uniprot ID: A0AA47E636
• Organism: Stutzerimonas frequens strain TF18
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1073309..1084178

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OSV15_RS05170 (OSV15_05170)	pilA	1074591..1075073 (-)	483	WP_042928458.1	pilin	Machinery gene
OSV15_RS05175 (OSV15_05175)	pilB	1075384..1077087 (+)	1704	WP_267932281.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OSV15_RS05180 (OSV15_05180)	pilC	1077089..1078306 (+)	1218	WP_267932282.1	type II secretion system F family protein	Machinery gene
OSV15_RS05185 (OSV15_05185)	pilD	1078309..1079178 (+)	870	WP_267932283.1	prepilin peptidase	Machinery gene
OSV15_RS05190 (OSV15_05190)	coaE	1079311..1079919 (+)	609	WP_267932284.1	dephospho-CoA kinase	-
OSV15_RS05195 (OSV15_05195)	yacG	1079916..1080113 (+)	198	WP_102840588.1	DNA gyrase inhibitor YacG	-
OSV15_RS05200 (OSV15_05200)	-	1080138..1080818 (-)	681	WP_102840589.1	energy-coupling factor ABC transporter permease	-
OSV15_RS05205 (OSV15_05205)	-	1080857..1081894 (-)	1038	WP_267932285.1	NADP(H)-dependent aldo-keto reductase	-
OSV15_RS05210 (OSV15_05210)	rplM	1082339..1082767 (+)	429	WP_063544471.1	50S ribosomal protein L13	-
OSV15_RS05215 (OSV15_05215)	rpsI	1082782..1083174 (+)	393	WP_013981948.1	30S ribosomal protein S9	-
OSV15_RS05220 (OSV15_05220)	petA	1083429..1084022 (+)	594	WP_156244357.1	ubiquinol-cytochrome c reductase iron-sulfur subunit	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32244.37 Da
• Isoelectric Point: 7.6233

>NTDB_id=761307 OSV15_RS05185 WP_267932283.1 1078309..1079178(+) (pilD) [Stutzerimonas frequens strain TF18]
MILIDYLASHVLAFVLSAAVLGLLVGSFLNVLIYRLPVMMQREWRVQAREFLELPCEPVGERFNLLLPNSRCPHCAHRIR
AWENVPLVSWLFLRGKCSSCQAPISCRYPLVELACGVLSGYVAWHFGFSWQAAMMLLLTWGLLAMSMIDVDHQLLPDSLV
LPLLWLGLIVNHFGLFTSLESALWGAVAGYLSLWSVYWLFKLATGKEGMGYGDFKLLAMLGAWGGWQVLPLTILLSSVVG
AVLGSILLKVQRAESGTPIPFGPYLAIAGWIALLWGERITESYLQFARF

Nucleotide

• Length: 870 bp

>NTDB_id=761307 OSV15_RS05185 WP_267932283.1 1078309..1079178(+) (pilD) [Stutzerimonas frequens strain TF18]
ATGATTCTGATCGATTACCTGGCCAGCCATGTGCTGGCCTTTGTTTTGTCTGCAGCAGTGCTCGGTCTGCTGGTTGGCAG
TTTCCTAAACGTCCTCATCTACCGGTTGCCGGTGATGATGCAGCGCGAATGGCGGGTGCAGGCCAGAGAATTTCTTGAGC
TGCCATGCGAACCGGTCGGTGAACGATTCAACCTGTTGCTACCGAATTCGCGCTGTCCGCATTGCGCTCATCGAATCCGC
GCATGGGAAAACGTTCCGCTGGTCAGTTGGCTGTTCTTGCGTGGCAAGTGTTCATCCTGCCAGGCGCCGATCAGTTGTCG
TTACCCGTTGGTGGAGTTGGCATGCGGTGTGCTCTCCGGGTATGTGGCATGGCATTTCGGCTTTTCCTGGCAGGCCGCCA
TGATGCTGTTACTGACCTGGGGTCTGCTGGCGATGAGCATGATTGATGTCGACCATCAATTGTTGCCTGACTCGCTCGTA
CTGCCCTTGTTGTGGCTGGGGTTGATCGTTAACCACTTCGGCTTGTTCACTTCGCTGGAGAGTGCGCTGTGGGGGGCGGT
GGCGGGCTATCTGAGTCTTTGGTCGGTGTACTGGCTTTTCAAGCTCGCCACCGGCAAAGAGGGCATGGGCTACGGCGACT
TCAAGCTGTTGGCGATGCTTGGGGCCTGGGGTGGCTGGCAGGTGTTGCCGCTTACCATCCTGTTGTCGTCAGTGGTCGGG
GCGGTGCTGGGTTCCATTCTTTTGAAGGTTCAGCGTGCAGAAAGCGGCACGCCCATTCCCTTTGGCCCTTATCTGGCGAT
CGCTGGGTGGATTGCGTTGCTTTGGGGTGAAAGGATCACCGAGAGCTATCTGCAATTCGCCCGCTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.474	94.81	0.526
pilD	Vibrio campbellii strain DS40M4	54.945	94.464	0.519
pilD	Acinetobacter baumannii D1279779	50.704	98.27	0.498
pilD	Acinetobacter nosocomialis M2	50.704	98.27	0.498
pilD	Neisseria gonorrhoeae MS11	54.373	91.003	0.495