Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   OOK74_RS10270 Genome accession   NZ_CP113241
Coordinates   2235774..2237486 (-) Length   570 a.a.
NCBI ID   WP_274722625.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2230774..2242486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS10250 - 2231525..2232358 (-) 834 WP_278182736.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  OOK74_RS10255 - 2232428..2233891 (-) 1464 WP_278182737.1 AAA family ATPase -
  OOK74_RS10260 aroB 2233947..2235032 (-) 1086 WP_278182738.1 3-dehydroquinate synthase -
  OOK74_RS10265 aroK 2235063..2235587 (-) 525 WP_166014237.1 shikimate kinase AroK -
  OOK74_RS10270 pilQ 2235774..2237486 (-) 1713 WP_274722625.1 type IV pilus secretin PilQ family protein Machinery gene
  OOK74_RS10275 pilP 2237512..2238030 (-) 519 WP_278182739.1 pilus assembly protein PilP Machinery gene
  OOK74_RS10280 pilO 2238020..2238610 (-) 591 WP_278182740.1 type 4a pilus biogenesis protein PilO Machinery gene
  OOK74_RS10285 pilN 2238603..2239187 (-) 585 WP_274722622.1 PilN domain-containing protein Machinery gene
  OOK74_RS10290 pilM 2239177..2240193 (-) 1017 WP_278182741.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 570 a.a.        Molecular weight: 62221.39 Da        Isoelectric Point: 4.6774

>NTDB_id=761112 OOK74_RS10270 WP_274722625.1 2235774..2237486(-) (pilQ) [Vibrio sp. gvc]
MKNGLKTYVAQTWLTLWIGLAVCTSSVAYAVDSVSANRLENIDFRVNKAQAAVLIVELASASVVVDVQKIPQGLSIDLLK
TDVADDKLYLLDVKDFATPVQSIEVFRKQPTTELIVSIEGEFKHDYSLKGKYLEVVISKLKVDEKPKSKSILEKEGKLIS
INFQDIPVRNVLQLIADYNSFNLVVSDSVVGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILIAPKEELDLREKQAL
EKARLTEELGDLKSQIIKINFAKASDIAAMIGGEGNVNMLSDRGSISIDERTNSLLIRELPDNIAVISEIIESLDIPVKQ
VQIEARIVTVKEGNIDELGVRWGVMSTNGSHSVGGSIESNLWQQGLLGDDDFPLDNFLNVNLGASANAPSIAFQVAKLGS
DTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSGASTVSFKKAVLSLKVTPQITPDNRLVLDLS
VTQDRRGETVKTGTGEAVSIDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELL
IFVTPKVVIQ

Nucleotide


Download         Length: 1713 bp        

>NTDB_id=761112 OOK74_RS10270 WP_274722625.1 2235774..2237486(-) (pilQ) [Vibrio sp. gvc]
ATGAAAAATGGATTGAAAACTTATGTCGCCCAGACTTGGTTGACCTTATGGATTGGTTTGGCGGTTTGCACTTCTTCCGT
CGCGTATGCTGTTGATTCTGTGTCGGCTAATCGATTAGAAAATATTGATTTTCGAGTCAATAAAGCCCAGGCCGCCGTGT
TAATTGTGGAATTGGCTTCCGCTTCGGTAGTGGTCGATGTGCAAAAGATCCCGCAAGGGTTAAGCATTGATCTGCTGAAA
ACCGATGTGGCCGATGACAAGCTTTATCTGCTCGATGTAAAAGATTTTGCCACTCCGGTGCAGAGCATTGAAGTGTTTAG
AAAGCAGCCGACCACAGAGTTGATTGTGAGCATTGAGGGTGAGTTTAAGCATGATTACTCTTTAAAAGGCAAATACCTTG
AAGTGGTGATCAGTAAACTCAAAGTGGATGAAAAGCCAAAATCGAAAAGTATCTTGGAAAAAGAGGGCAAGCTGATCTCG
ATTAACTTCCAAGATATTCCGGTGCGCAATGTCTTGCAGCTGATTGCTGACTATAACAGCTTCAATTTAGTGGTCTCGGA
TTCAGTGGTTGGCAACCTCACTTTACGCTTAGATGGGGTACCTTGGCAGCAAGTGCTGGATATTATTTTGCAAGTCAAAG
GCTTGGATAAGCGGGTCGATGGCAACGTGATTCTGATTGCTCCTAAAGAAGAGCTGGATCTACGTGAGAAACAAGCTTTG
GAAAAGGCGCGTTTGACCGAAGAGCTTGGCGATTTAAAATCACAAATCATCAAGATTAACTTTGCCAAAGCGTCGGATAT
CGCCGCGATGATCGGCGGTGAGGGCAATGTTAATATGCTGTCGGATCGTGGTTCAATCAGCATTGATGAGCGGACTAACT
CGCTACTGATCCGTGAGTTACCGGACAATATCGCGGTGATCAGTGAGATCATTGAATCACTGGATATCCCAGTTAAACAA
GTACAAATTGAAGCGCGGATCGTGACCGTCAAGGAAGGCAATATTGATGAGCTTGGGGTGCGTTGGGGAGTGATGTCAAC
CAATGGTAGCCATTCCGTTGGTGGTTCGATTGAAAGCAATCTCTGGCAACAAGGTCTGCTCGGTGATGATGACTTTCCGC
TCGATAATTTCTTAAATGTTAACTTAGGCGCTTCAGCCAACGCACCTTCGATTGCTTTCCAGGTGGCCAAATTAGGTTCA
GATACGTTGCTCGATTTAGAACTTTCGGCACTGCAAAATGAGTCAAAAGCAGAGATCATCTCTAGCCCACGATTGATCAC
CACCAATAAACAGCCCGCCTATATTGAACAAGGTACTGAGATCCCGTACCTCGAATCTTCCTCCAGCGGCGCTTCAACCG
TATCATTTAAAAAAGCGGTATTGAGTTTAAAAGTGACGCCGCAAATTACCCCAGACAATCGCTTGGTGCTCGATTTGAGC
GTGACTCAAGATCGACGTGGTGAAACGGTCAAAACCGGAACCGGAGAAGCGGTTTCAATTGATACCCAGCGGATCGGCAC
TCAGGTGTTGGTCAATAATGGCGAAACGGTGGTGCTGGGCGGCATTTTCCAACACAGTATCAATAATTCGGTGGATAAAG
TGCCATTGCTCGGCGATCTGCCCGTATTAGGCGCTCTGTTTCGCCGCACTTACGAGCAAATGGGTAAAAGTGAGCTACTG
ATTTTTGTCACGCCGAAAGTCGTCATTCAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(255-320)

Bacterial type II and III secretion system protein (Secretin)

(410-568)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

90.718

100

0.909
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

90.718

100

0.909
  pilQ Vibrio campbellii strain DS40M4

77.273

96.491

0.746
  pilQ Legionella pneumophila strain ERS1305867

42.435

95.088

0.404
  pilQ Legionella pneumophila strain Lp02

42.435

95.088

0.404
  pilQ Acinetobacter baumannii strain A118

37.479

100

0.391
  pilQ Acinetobacter baumannii D1279779

37.479

100

0.391
  comQ Acinetobacter baylyi ADP1

39.643

98.246

0.389
  pilQ Pseudomonas aeruginosa PAK

39.209

97.544

0.382