Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   OOK74_RS10285 Genome accession   NZ_CP113241
Coordinates   2238603..2239187 (-) Length   194 a.a.
NCBI ID   WP_274722622.1    Uniprot ID   -
Organism   Vibrio sp. gvc     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2233603..2244187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OOK74_RS10260 aroB 2233947..2235032 (-) 1086 WP_278182738.1 3-dehydroquinate synthase -
  OOK74_RS10265 aroK 2235063..2235587 (-) 525 WP_166014237.1 shikimate kinase AroK -
  OOK74_RS10270 pilQ 2235774..2237486 (-) 1713 WP_274722625.1 type IV pilus secretin PilQ family protein Machinery gene
  OOK74_RS10275 pilP 2237512..2238030 (-) 519 WP_278182739.1 pilus assembly protein PilP Machinery gene
  OOK74_RS10280 pilO 2238020..2238610 (-) 591 WP_278182740.1 type 4a pilus biogenesis protein PilO Machinery gene
  OOK74_RS10285 pilN 2238603..2239187 (-) 585 WP_274722622.1 PilN domain-containing protein Machinery gene
  OOK74_RS10290 pilM 2239177..2240193 (-) 1017 WP_278182741.1 type IV pilus assembly protein PilM Machinery gene
  OOK74_RS10295 - 2240345..2242822 (+) 2478 WP_278182742.1 penicillin-binding protein 1A -
  OOK74_RS10300 oxyR 2242875..2243780 (-) 906 WP_278182743.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 22389.94 Da        Isoelectric Point: 9.7489

>NTDB_id=761115 OOK74_RS10285 WP_274722622.1 2238603..2239187(-) (pilN) [Vibrio sp. gvc]
MLDRINLLPWREARREAHKRRFLGLVMLGILLAVLMQFAAGNYLSRQVAQQQERIGYLKQHIFSLDQQVSQLKLSEEEHK
ALLTRLHVVEQLQHKRNTTTDFMNLMPQLIPEGVYVDKIKMNGQQIEITGISDSTARLATMLDNLEKSTKLSEVEMHEIV
AGNKRFGKQFQSFKVSFQLLLARSELKQGEVSDD

Nucleotide


Download         Length: 585 bp        

>NTDB_id=761115 OOK74_RS10285 WP_274722622.1 2238603..2239187(-) (pilN) [Vibrio sp. gvc]
ATGCTGGATAGAATTAATTTATTGCCATGGCGAGAAGCTCGGCGTGAAGCTCATAAACGGCGTTTTTTAGGTTTAGTCAT
GCTCGGTATTTTACTCGCAGTGTTGATGCAGTTTGCCGCAGGTAACTATTTGAGCCGTCAAGTGGCGCAACAGCAAGAGC
GGATTGGCTATTTAAAGCAGCATATTTTTTCGCTCGATCAGCAAGTCTCACAATTGAAACTGAGCGAAGAGGAACACAAA
GCGCTGCTGACTCGGCTGCATGTGGTCGAGCAATTGCAGCACAAACGCAATACCACCACCGATTTTATGAATCTGATGCC
GCAGTTGATCCCAGAAGGTGTGTATGTCGATAAGATCAAAATGAATGGTCAGCAAATAGAGATCACCGGTATTAGCGATT
CGACCGCCCGTTTAGCCACTATGCTCGACAACCTAGAAAAGTCGACCAAATTAAGCGAGGTGGAGATGCATGAGATTGTG
GCGGGCAATAAACGCTTTGGTAAGCAGTTTCAGAGCTTCAAAGTCTCTTTCCAATTGTTGCTGGCGCGATCTGAGCTAAA
ACAGGGAGAGGTATCCGATGACTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio cholerae strain A1552

80.952

97.423

0.789
  pilN Vibrio campbellii strain DS40M4

59.322

91.237

0.541