Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OTU47_RS04460 Genome accession   NZ_CP113115
Coordinates   835186..836169 (+) Length   327 a.a.
NCBI ID   WP_223840522.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 830186..841169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTU47_RS04435 (OTU47_04435) - 830265..830675 (+) 411 WP_000595758.1 hypothetical protein -
  OTU47_RS04440 (OTU47_04440) ply 830686..832101 (+) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  OTU47_RS04445 (OTU47_04445) - 832982..833698 (+) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  OTU47_RS04450 (OTU47_04450) - 833822..834293 (+) 472 Protein_846 MarR family winged helix-turn-helix transcriptional regulator -
  OTU47_RS04455 (OTU47_04455) rcrP 834310..835131 (+) 822 WP_000601682.1 ABC transporter permease Regulator
  OTU47_RS04460 (OTU47_04460) rcrQ 835186..836169 (+) 984 WP_223840522.1 ABC transporter ATP-binding protein Regulator
  OTU47_RS04465 (OTU47_04465) - 836235..836597 (+) 363 WP_000078805.1 DUF2200 domain-containing protein -
  OTU47_RS04470 (OTU47_04470) - 836594..837097 (+) 504 WP_000800945.1 phosphatase PAP2 family protein -
  OTU47_RS04475 (OTU47_04475) - 837211..837657 (+) 447 WP_000776596.1 LytTR family DNA-binding domain-containing protein -
  OTU47_RS04480 (OTU47_04480) - 837662..838336 (+) 675 WP_000725719.1 LiaF transmembrane domain-containing protein -
  OTU47_RS04485 (OTU47_04485) - 838497..838688 (+) 192 WP_000291826.1 cell wall-binding protein -
  OTU47_RS04490 (OTU47_04490) - 838695..838775 (+) 81 WP_223200442.1 hypothetical protein -
  OTU47_RS04495 (OTU47_04495) - 838973..839272 (+) 300 WP_001013974.1 DUF4651 domain-containing protein -
  OTU47_RS04500 (OTU47_04500) - 839269..839586 (+) 318 WP_000615767.1 thioredoxin family protein -
  OTU47_RS04505 (OTU47_04505) ytpR 839602..840228 (+) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  OTU47_RS04510 (OTU47_04510) - 840261..841022 (+) 762 WP_001107743.1 SDR family NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36156.86 Da        Isoelectric Point: 4.4298

>NTDB_id=760426 OTU47_RS04460 WP_223840522.1 835186..836169(+) (rcrQ) [Streptococcus pneumoniae strain NP2]
MVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTVAFIGSTGSGKSTLVNL
IPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHIDGVDTKAMTRSEVHDA
FSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVGQKQLLTIARALLKDAP
LLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEELMAQGGFYADLYNSQF
TEDEAEE

Nucleotide


Download         Length: 984 bp        

>NTDB_id=760426 OTU47_RS04460 WP_223840522.1 835186..836169(+) (rcrQ) [Streptococcus pneumoniae strain NP2]
ATGGTCTCTGCTAAGCGGATTAATCAAGTTTTAGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTACAGCTGACTGA
TGAAAACTTCAAAGGTCAGGTCGAGTTTAAGGATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATG
TTAGCTTTAAAGCAGAAACTGGTCAAACAGTGGCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTG
ATTCCACGTTTCTACGACGTGTCAGCAGGAGAAATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGAC
AGCTCATGCTGGTCAAAAGGTTGCCATTGTTGGGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAAT
TCTATGAGATTGATAAGGGAAGTATTCACATTGATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCC
TTTTCAATGGTCTTGCAGGATACCTGGCTCTTTGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAG
TGATGAACGAATGATGGAAGCTAGTAAGGCTGTGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCA
TCTTGGATGACACCGTGACCTTGTCTGTAGGACAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCG
CTTTTGATTTTGGATGAGGCGACTTCTTCTGTTGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGAT
GGAAGGACGCACATCCTTTGTCATTGCCCACCGCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATG
GAAATATCATCGAGCAAGGCAACTATGAGGAACTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTT
ACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(52-102)

ABC transporter (ABC_tran)

(104-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

68.502

0.554