NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	P7I94_RS00535	Genome accession	NZ_CP124657
Coordinates	22012..23100 (+)	Length	362 a.a.
NCBI ID	WP_023095009.1	Uniprot ID	-
Organism	Pseudomonas aeruginosa strain 2022CK-00069
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 17012..28100

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
P7I94_RS00515 (P7I94_00515)	rsmB	17907..19211 (-)	1305	WP_023095007.1	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	-
P7I94_RS00520 (P7I94_00520)	fmt	19208..20152 (-)	945	WP_023095008.1	methionyl-tRNA formyltransferase	-
P7I94_RS00525 (P7I94_00525)	def	20207..20713 (-)	507	WP_003107059.1	peptide deformylase	-
P7I94_RS00530 (P7I94_00530)	tsaP	20852..21877 (+)	1026	WP_003097294.1	LysM peptidoglycan-binding domain-containing protein	Machinery gene
P7I94_RS00535 (P7I94_00535)	dprA	22012..23100 (+)	1089	WP_023095009.1	DNA-processing protein DprA	Machinery gene
P7I94_RS00540 (P7I94_00540)	-	23141..23698 (+)	558	WP_003097300.1	Sua5/YciO/YrdC/YwlC family protein	-
P7I94_RS00545 (P7I94_00545)	-	23708..24685 (-)	978	WP_003097303.1	NADPH:quinone reductase	-
P7I94_RS00550 (P7I94_00550)	hemF	24876..25793 (+)	918	WP_003097311.1	oxygen-dependent coproporphyrinogen oxidase	-
P7I94_RS00555 (P7I94_00555)	aroE	25851..26675 (+)	825	WP_003097314.1	shikimate dehydrogenase	-
P7I94_RS00560 (P7I94_00560)	-	26786..27772 (+)	987	WP_003111200.1	phospholipase C	-

Sequence

Protein

Download Length: 362 a.a. Molecular weight: 37759.31 Da Isoelectric Point: 7.0742

                                >NTDB_id=760018 P7I94_RS00535 WP_023095009.1 22012..23100(+) (dprA) [Pseudomonas aeruginosa strain 2022CK-00069]

MKNHSPAELEARLRLHGLPELGPMRFLRLIEAFGSASSALAAPAGAWRTLGVPAEAAAARRSPAVREAAGEALRWLEGPR

RHLLMWDDPGYPALLAEVADAPPLLYVEGTPETLERPQLAMVGSRRASPAGLGTARSFARSLAQGGFAITSGLALGIDGA

AHEGALEVGGATVAVLGTGLRRLYPRRHEALARRIVEGGGALVSELPLDSPPLPANFPRRNRIISGLSLGVLVVEASPAS

GSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGALLVESVGHVLEALRGWAQAEPAEAPAQPLPHPLLALLRAVP

YTSEGLAAASGMTLPDVLATLSELELDGRVACEAGTWVHRSG

Nucleotide

Download Length: 1089 bp

                                >NTDB_id=760018 P7I94_RS00535 WP_023095009.1 22012..23100(+) (dprA) [Pseudomonas aeruginosa strain 2022CK-00069]

ATGAAGAACCATTCTCCAGCCGAACTGGAAGCACGGCTGCGTCTGCATGGCCTGCCCGAACTGGGACCCATGCGCTTCCT

GCGCTTGATCGAGGCCTTCGGTTCGGCCTCTTCCGCGCTTGCCGCGCCAGCCGGCGCCTGGCGCACCCTGGGAGTGCCTG

CCGAGGCCGCTGCCGCGCGGCGCAGCCCGGCGGTGCGGGAAGCGGCGGGTGAAGCCCTGCGCTGGCTGGAAGGTCCGCGC

AGGCACCTGCTGATGTGGGACGACCCGGGATACCCGGCACTGCTCGCCGAAGTCGCCGATGCCCCGCCGCTGCTGTACGT

CGAAGGCACCCCGGAGACTCTGGAACGGCCGCAACTGGCGATGGTCGGCAGCCGCCGCGCCAGCCCCGCCGGGCTGGGCA

CCGCCCGGAGCTTTGCGCGCAGCCTGGCGCAGGGCGGCTTCGCCATCACCAGCGGGCTGGCCCTGGGCATCGATGGCGCC

GCCCACGAGGGCGCGCTGGAGGTTGGCGGCGCGACCGTGGCAGTCCTCGGCACCGGCCTGCGCAGGCTCTATCCGCGCCG

CCACGAGGCGCTGGCGCGGCGCATCGTCGAGGGTGGCGGCGCGCTGGTTTCGGAGCTGCCGCTGGACAGCCCGCCGCTGC

CGGCAAACTTTCCCCGGCGCAACCGCATCATCAGCGGACTCTCGCTGGGTGTGCTGGTGGTCGAGGCAAGTCCCGCCAGC

GGCTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTCCATCCACCACCCCGG

CGCACGTGGCTGCCACCAGCTGATTCGCGATGGCGCGCTGCTGGTGGAAAGCGTCGGGCACGTGCTCGAAGCACTGCGCG

GCTGGGCGCAGGCGGAGCCAGCGGAAGCGCCGGCGCAACCCCTGCCCCACCCTTTGCTGGCGCTGCTGCGCGCCGTGCCC

TACACCAGCGAAGGCCTGGCCGCCGCCAGCGGCATGACGCTGCCCGACGTGCTGGCGACGCTCAGCGAACTGGAACTCGA

CGGCCGGGTCGCCTGCGAGGCCGGCACCTGGGTGCATCGCTCCGGCTGA

Domains

Predicted by InterProScan.

DNA recombination-mediator protein A (DNA_processg_A)

(81-283)

DprA winged helix domain (WHD_DprA)

(297-355)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Vibrio cholerae strain A1552	42.781	100	0.442
dprA	Vibrio cholerae O1 biovar El Tor strain E7946	42.781	100	0.442
dprA	Vibrio campbellii strain DS40M4	43.243	100	0.442
dprA	Legionella pneumophila strain ERS1305867	43.38	98.066	0.425
dprA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	41.408	98.066	0.406
dprA	Acinetobacter baumannii D1279779	37.569	100	0.376
dprA	Acinetobacter baumannii strain A118	38.177	96.961	0.37
dprA	Glaesserella parasuis strain SC1401	46.853	79.006	0.37
dprA	Neisseria gonorrhoeae strain FA1090	44.224	83.702	0.37
dprA	Neisseria gonorrhoeae MS11	43.894	83.702	0.367
dprA	Neisseria meningitidis MC58	45.704	80.387	0.367
dprA	Neisseria meningitidis strain C311	45.704	80.387	0.367

Detailed information NTG0760018