Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   P7I82_RS28370 Genome accession   NZ_CP124652
Coordinates   6029855..6030352 (-) Length   165 a.a.
NCBI ID   WP_003114685.1    Uniprot ID   A0A0H2ZGD4
Organism   Pseudomonas aeruginosa strain 2020CK-00443     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6024855..6035352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P7I82_RS28350 (P7I82_28350) pchD 6025641..6027284 (+) 1644 WP_009316327.1 pyochelin biosynthesis salicyl-AMP ligase PchD -
  P7I82_RS28355 (P7I82_28355) pchC 6027281..6028036 (+) 756 WP_003093651.1 pyochelin biosynthesis editing thioesterase PchC -
  P7I82_RS28360 (P7I82_28360) pchB 6028036..6028341 (+) 306 WP_003106950.1 isochorismate lyase PchB -
  P7I82_RS28365 (P7I82_28365) pchA 6028338..6029768 (+) 1431 WP_023095164.1 isochorismate synthase PchA -
  P7I82_RS28370 (P7I82_28370) ssb 6029855..6030352 (-) 498 WP_003114685.1 single-stranded DNA-binding protein Machinery gene
  P7I82_RS28375 (P7I82_28375) - 6030369..6031757 (-) 1389 WP_023095163.1 MFS transporter -
  P7I82_RS28380 (P7I82_28380) uvrA 6031971..6034808 (+) 2838 WP_003110572.1 excinuclease ABC subunit UvrA Machinery gene
  P7I82_RS28385 (P7I82_28385) bfr 6034880..6035344 (-) 465 WP_003093668.1 bacterioferritin -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18557.46 Da        Isoelectric Point: 5.2781

>NTDB_id=759804 P7I82_RS28370 WP_003114685.1 6029855..6030352(-) (ssb) [Pseudomonas aeruginosa strain 2020CK-00443]
MARGVNKVILVGNVGGDPETRYMPNGNAVTNITLATSESWKDKQTGQQQERTEWHRVVFFGRLAEIAGEYLRKGSQVYVE
GSLRTRKWQGQDGQDRYTTEIVVDINGNMQLLGGRPSGDDSQRAPREPMQRPQQAPQQQSRPAPQQQPAPQPAQDYDSFD
DDIPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=759804 P7I82_RS28370 WP_003114685.1 6029855..6030352(-) (ssb) [Pseudomonas aeruginosa strain 2020CK-00443]
ATGGCCCGTGGGGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAACGGCAA
TGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAGACCGGCCAGCAACAGGAGCGCACCGAAT
GGCACCGCGTGGTGTTCTTCGGCCGCCTGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAA
GGCAGCCTGCGCACTCGCAAGTGGCAGGGCCAGGACGGTCAGGATCGCTACACCACCGAGATCGTGGTCGACATCAACGG
CAACATGCAGTTGCTCGGCGGCCGCCCCTCCGGCGACGACTCGCAGCGTGCCCCGCGCGAGCCCATGCAGCGCCCGCAGC
AGGCCCCGCAGCAGCAGTCGCGTCCGGCCCCGCAGCAGCAACCGGCGCCGCAGCCGGCCCAGGACTACGACAGCTTCGAC
GACGACATCCCGTTCTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(5-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZGD4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

58.659

100

0.636
  ssb Glaesserella parasuis strain SC1401

52.486

100

0.576
  ssb Neisseria gonorrhoeae MS11

48.045

100

0.521
  ssb Neisseria meningitidis MC58

47.486

100

0.515