Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OS087_RS01770 Genome accession   NZ_CP113047
Coordinates   312499..312927 (-) Length   142 a.a.
NCBI ID   WP_000934783.1    Uniprot ID   -
Organism   Staphylococcus aureus strain Sett     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 280229..332476 312499..312927 within 0


Gene organization within MGE regions


Location: 280229..332476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS087_RS01520 scn 280229..280579 (-) 351 WP_000702263.1 complement inhibitor SCIN-A -
  OS087_RS01525 - 281090..281428 (-) 339 Protein_266 SH3 domain-containing protein -
  OS087_RS01530 sak 282076..282567 (-) 492 WP_267830481.1 staphylokinase -
  OS087_RS01535 - 282758..283513 (-) 756 WP_000861038.1 CHAP domain-containing protein -
  OS087_RS01540 - 283525..283779 (-) 255 WP_000611512.1 phage holin -
  OS087_RS01545 - 283831..283938 (+) 108 WP_031866188.1 hypothetical protein -
  OS087_RS01550 pepG1 283991..284125 (-) 135 WP_000226108.1 type I toxin-antitoxin system toxin PepG1 -
  OS087_RS01555 - 284317..284613 (-) 297 WP_000539688.1 DUF2951 domain-containing protein -
  OS087_RS01560 - 284671..284958 (-) 288 WP_001040261.1 hypothetical protein -
  OS087_RS01565 - 285005..285157 (-) 153 WP_001153681.1 hypothetical protein -
  OS087_RS01570 - 285147..288932 (-) 3786 WP_000582178.1 phage tail spike protein -
  OS087_RS01575 - 288948..290432 (-) 1485 WP_267830482.1 phage distal tail protein -
  OS087_RS13910 - 290429..291490 (-) 1062 WP_418896067.1 peptidoglycan DD-metalloendopeptidase family protein -
  OS087_RS01580 - 291640..294974 (-) 3335 Protein_278 phage tail tape measure protein -
  OS087_RS01585 gpGT 295031..295168 (-) 138 WP_001549167.1 phage tail assembly chaperone GT -
  OS087_RS01590 gpG 295219..295569 (-) 351 WP_001096355.1 phage tail assembly chaperone G -
  OS087_RS01595 - 295619..295849 (-) 231 Protein_281 Ig-like domain-containing protein -
  OS087_RS01600 - 295885..296529 (-) 645 WP_000268740.1 major tail protein -
  OS087_RS01605 - 296530..296937 (-) 408 WP_000565498.1 hypothetical protein -
  OS087_RS01610 - 296934..297338 (-) 405 WP_000114225.1 HK97 gp10 family phage protein -
  OS087_RS01615 - 297335..297697 (-) 363 WP_000755150.1 head-tail adaptor protein -
  OS087_RS01620 - 297681..297965 (-) 285 WP_000150936.1 phage head-tail adapter protein -
  OS087_RS01625 - 297955..298239 (-) 285 WP_031807821.1 hypothetical protein -
  OS087_RS01630 - 298259..299404 (-) 1146 WP_000154559.1 phage major capsid protein -
  OS087_RS01635 - 299428..300165 (-) 738 WP_000642728.1 head maturation protease, ClpP-related -
  OS087_RS01640 - 300149..301336 (-) 1188 WP_267830483.1 phage portal protein -
  OS087_RS01645 - 301352..303013 (-) 1662 WP_000625088.1 terminase large subunit -
  OS087_RS01650 - 303010..303354 (-) 345 WP_267811084.1 hypothetical protein -
  OS087_RS01655 - 303485..303784 (-) 300 WP_000988330.1 HNH endonuclease -
  OS087_RS01660 - 304016..304432 (-) 417 WP_000590122.1 hypothetical protein -
  OS087_RS01665 - 304460..304660 (-) 201 WP_000265043.1 DUF1514 family protein -
  OS087_RS01670 rinB 304660..304809 (-) 150 WP_000237868.1 transcriptional activator RinB -
  OS087_RS01675 - 304812..305012 (-) 201 WP_000039541.1 hypothetical protein -
  OS087_RS01680 - 304987..305175 (-) 189 WP_000195795.1 DUF1381 domain-containing protein -
  OS087_RS01685 - 305172..305417 (-) 246 WP_001282070.1 hypothetical protein -
  OS087_RS01690 - 305454..305963 (-) 510 WP_031911468.1 dUTP diphosphatase -
  OS087_RS01695 - 305956..306204 (-) 249 WP_064266706.1 DUF1024 family protein -
  OS087_RS01700 - 306197..306472 (-) 276 WP_015978314.1 hypothetical protein -
  OS087_RS01705 - 306472..306876 (-) 405 WP_000694059.1 hypothetical protein -
  OS087_RS01710 - 306890..307141 (-) 252 Protein_304 SAV1978 family virulence-associated passenger protein -
  OS087_RS01715 - 307150..307351 (-) 202 Protein_305 hypothetical protein -
  OS087_RS01720 - 307354..307611 (-) 258 WP_000111490.1 DUF3310 domain-containing protein -
  OS087_RS01725 - 307608..308228 (-) 621 WP_267830484.1 SA1788 family PVL leukocidin-associated protein -
  OS087_RS01730 - 308229..308414 (-) 186 WP_001187240.1 DUF3113 family protein -
  OS087_RS01735 - 308419..308823 (-) 405 WP_000049784.1 DUF1064 domain-containing protein -
  OS087_RS01740 - 308834..309055 (-) 222 WP_001123673.1 DUF3269 family protein -
  OS087_RS01745 - 309068..309229 (-) 162 WP_000237153.1 hypothetical protein -
  OS087_RS01750 - 309223..310002 (-) 780 WP_000803065.1 ATP-binding protein -
  OS087_RS01755 - 310013..310783 (-) 771 WP_000190224.1 conserved phage C-terminal domain-containing protein -
  OS087_RS01760 - 310848..311705 (+) 858 WP_000371250.1 DUF4393 domain-containing protein -
  OS087_RS01765 - 311811..312485 (-) 675 WP_015977703.1 putative HNHc nuclease -
  OS087_RS01770 ssbA 312499..312927 (-) 429 WP_000934783.1 single-stranded DNA-binding protein Machinery gene
  OS087_RS01775 - 312927..313565 (-) 639 WP_001043071.1 ERF family protein -
  OS087_RS01780 - 313565..314044 (-) 480 WP_000002516.1 siphovirus Gp157 family protein -
  OS087_RS01785 - 314059..314319 (-) 261 WP_031807830.1 DUF1108 family protein -
  OS087_RS01790 - 314411..314572 (-) 162 WP_000066020.1 DUF1270 domain-containing protein -
  OS087_RS01795 - 314569..314889 (-) 321 WP_001120197.1 DUF771 domain-containing protein -
  OS087_RS01800 - 314948..315580 (+) 633 WP_000275058.1 hypothetical protein -
  OS087_RS01805 - 315595..315735 (-) 141 WP_000939496.1 hypothetical protein -
  OS087_RS01810 - 315766..315964 (-) 199 Protein_324 hypothetical protein -
  OS087_RS01815 - 315977..316774 (-) 798 WP_267830486.1 phage antirepressor -
  OS087_RS01820 - 316790..317059 (-) 270 WP_267830487.1 helix-turn-helix transcriptional regulator -
  OS087_RS01825 - 317056..317230 (-) 175 Protein_327 transcriptional regulator -
  OS087_RS01830 - 317193..317906 (+) 714 WP_031768797.1 XRE family transcriptional regulator -
  OS087_RS01835 - 317918..318064 (+) 147 WP_001049401.1 hypothetical protein -
  OS087_RS01840 - 318061..318246 (+) 186 WP_000109193.1 hypothetical protein -
  OS087_RS01845 - 318302..318886 (+) 585 WP_031901045.1 hypothetical protein -
  OS087_RS01850 - 319116..319298 (+) 183 WP_000694772.1 hypothetical protein -
  OS087_RS01855 - 319398..320381 (+) 984 WP_031901044.1 glycosyltransferase family 2 protein -
  OS087_RS01860 - 320392..320634 (+) 243 WP_031901043.1 hypothetical protein -
  OS087_RS01865 - 320697..321734 (+) 1038 WP_000857185.1 tyrosine-type recombinase/integrase -
  OS087_RS01870 sph 321791..322615 (+) 825 Protein_336 sphingomyelin phosphodiesterase -
  OS087_RS01875 lukG 322853..323869 (-) 1017 WP_000595393.1 bi-component leukocidin LukGH subunit G -
  OS087_RS01880 lukH 323891..324946 (-) 1056 WP_267830488.1 bi-component leukocidin LukGH subunit H -
  OS087_RS01885 - 325382..326605 (+) 1224 WP_267830489.1 ArgE/DapE family deacylase -
  OS087_RS01890 - 327328..327771 (-) 444 WP_000361985.1 hypothetical protein -
  OS087_RS01895 - 328659..329966 (+) 1308 WP_001045079.1 TrkH family potassium uptake protein -
  OS087_RS01900 groL 330500..332116 (-) 1617 WP_000240642.1 chaperonin GroEL -
  OS087_RS01905 groES 332192..332476 (-) 285 WP_000917289.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 16047.61 Da        Isoelectric Point: 5.8724

>NTDB_id=759484 OS087_RS01770 WP_000934783.1 312499..312927(-) (ssbA) [Staphylococcus aureus strain Sett]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNTTAIIDDDLPF

Nucleotide


Download         Length: 429 bp        

>NTDB_id=759484 OS087_RS01770 WP_000934783.1 312499..312927(-) (ssbA) [Staphylococcus aureus strain Sett]
ATGTTAAACAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAATACCACTG
CGATTATTGATGATGACTTACCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.711
  ssb Latilactobacillus sakei subsp. sakei 23K

50.588

100

0.606
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

74.648

0.437
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.657

100

0.43
  ssbA Streptococcus mutans UA159

46.957

80.986

0.38
  ssbB/cilA Streptococcus mitis NCTC 12261

45.763

83.099

0.38
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.763

83.099

0.38
  ssbB/cilA Streptococcus pneumoniae Rx1

44.915

83.099

0.373
  ssbB/cilA Streptococcus pneumoniae D39

44.915

83.099

0.373
  ssbB/cilA Streptococcus pneumoniae R6

44.915

83.099

0.373
  ssbB/cilA Streptococcus mitis SK321

44.915

83.099

0.373