Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   H7X90_RS17245 Genome accession   NZ_AP021908
Coordinates   3727316..3728575 (+) Length   419 a.a.
NCBI ID   WP_099474767.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain WP1-W18-CRE-01     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3722316..3733575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7X90_RS17225 (WP1W18C01_33670) pilR 3722511..3723884 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  H7X90_RS17230 (WP1W18C01_33680) pilB 3724010..3725743 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H7X90_RS17235 (WP1W18C01_33690) pilA/pilAI 3725966..3726373 (-) 408 WP_099474769.1 pilin Machinery gene
  H7X90_RS17240 (WP1W18C01_33700) - 3726526..3726963 (-) 438 WP_183153553.1 pilin -
  H7X90_RS17245 (WP1W18C01_33710) pilC 3727316..3728575 (+) 1260 WP_099474767.1 type II secretion system F family protein Machinery gene
  H7X90_RS17250 (WP1W18C01_33720) - 3728583..3729446 (+) 864 WP_065183902.1 A24 family peptidase -
  H7X90_RS17255 (WP1W18C01_33730) coaE 3729458..3730069 (+) 612 WP_183153554.1 dephospho-CoA kinase -
  H7X90_RS17260 (WP1W18C01_33740) - 3730404..3731318 (+) 915 WP_005407612.1 IS110-like element ISStma6 family transposase -
  H7X90_RS17265 (WP1W18C01_33750) - 3731330..3731716 (-) 387 WP_043034308.1 hypothetical protein -
  H7X90_RS17270 (WP1W18C01_33760) - 3732199..3733566 (-) 1368 WP_043034309.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45910.41 Da        Isoelectric Point: 10.1071

>NTDB_id=75780 H7X90_RS17245 WP_099474767.1 3727316..3728575(+) (pilC) [Stenotrophomonas maltophilia strain WP1-W18-CRE-01]
MSVSRSAIKKEPVARATMELQPFVWEGTDKRGVKMKGEQLAKNANLLRAELRRQGINPGQVKPKPKPLFGAAGSPVKPKD
IAFFSRQMATMMKSGVPIVSALDIIASGHKNPRMKKLVDTIRTDIEGGSSMYEAISKHPVQFDELYRNLVRAGEGAGVLE
TVLDTVATYKENIEALKGKIKKALFYPIMVVVVAMLVSGIMLVFVVPQFEDVFKSFGAELPAFTQMVVNLSRFMVSWWWL
MLLVAIGTAVALVMSYKRSPKMQHAMDRLVLKVPVIGQIMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AVLRMRDDVSVGYPVNMSMKQTNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNSVDALSSLLEPMIMVFIGTIV
GGMVIAMYLPIFKLGAVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=75780 H7X90_RS17245 WP_099474767.1 3727316..3728575(+) (pilC) [Stenotrophomonas maltophilia strain WP1-W18-CRE-01]
ATGTCTGTCAGTCGCAGTGCGATCAAGAAAGAGCCGGTGGCGCGCGCCACCATGGAGCTGCAGCCGTTTGTCTGGGAGGG
GACCGACAAGCGGGGCGTGAAGATGAAGGGCGAGCAGCTGGCCAAGAACGCCAACCTGCTGCGCGCCGAGCTGCGCCGCC
AGGGCATCAACCCGGGCCAGGTCAAGCCCAAGCCGAAGCCGCTGTTCGGCGCCGCCGGCAGCCCGGTCAAGCCCAAGGAC
ATCGCCTTCTTCAGCCGGCAGATGGCCACGATGATGAAATCCGGCGTGCCGATCGTGTCGGCGCTGGACATCATCGCCAG
CGGGCACAAGAACCCGCGGATGAAGAAGCTGGTCGACACCATCCGCACCGACATCGAGGGCGGCTCCTCGATGTACGAGG
CGATCAGCAAGCACCCGGTGCAGTTCGACGAGCTGTACCGCAACCTGGTGCGGGCCGGCGAAGGTGCCGGCGTTCTGGAA
ACCGTGCTGGACACGGTGGCCACCTACAAGGAGAACATCGAAGCGCTGAAGGGCAAGATCAAGAAAGCGCTGTTCTACCC
GATCATGGTGGTGGTGGTGGCCATGCTGGTCAGCGGCATCATGCTGGTGTTCGTGGTGCCGCAGTTCGAGGACGTGTTCA
AGAGCTTTGGTGCCGAGCTGCCCGCCTTCACCCAGATGGTGGTGAACCTTTCGAGATTCATGGTGTCGTGGTGGTGGCTG
ATGCTGCTGGTCGCGATCGGTACGGCGGTCGCCCTGGTCATGTCCTACAAGCGCTCGCCGAAGATGCAGCATGCGATGGA
CCGGCTCGTGCTGAAGGTGCCGGTGATCGGGCAGATCATGCACAACAGCGCCATCGCCCGCTTCTCGCGCACCACCGCGG
TGACCTTCAAGGCCGGCGTACCGCTGGTGGAGGCGCTGGGCATCGTGGCCGGTGCTACCGGCAACACCGTGTACGAAGAG
GCGGTGCTGCGCATGCGCGACGACGTCTCGGTGGGTTACCCGGTGAACATGTCGATGAAGCAGACCAACCTGTTCCCGCA
CATGGTCATCCAGATGACCGGCATCGGCGAAGAGGCTGGTGCGCTGGACGCCATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATTCGGTGGATGCCCTGAGCAGCCTGCTGGAACCGATGATCATGGTGTTCATTGGTACCATTGTG
GGCGGCATGGTGATTGCCATGTACCTTCCCATCTTCAAACTCGGCGCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

55.051

94.511

0.52
  pilC Acinetobacter baylyi ADP1

51.597

97.136

0.501
  pilC Legionella pneumophila strain ERS1305867

51.88

95.227

0.494
  pilC Acinetobacter baumannii D1279779

50.63

94.749

0.48
  pilG Neisseria gonorrhoeae MS11

44.221

94.988

0.42
  pilG Neisseria meningitidis 44/76-A

43.97

94.988

0.418
  pilC Vibrio cholerae strain A1552

41.872

96.897

0.406
  pilC Vibrio campbellii strain DS40M4

41.397

95.704

0.396
  pilC Thermus thermophilus HB27

38.06

95.943

0.365

Multiple sequence alignment