Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   H7X90_RS17225 Genome accession   NZ_AP021908
Coordinates   3722511..3723884 (+) Length   457 a.a.
NCBI ID   WP_005410795.1    Uniprot ID   A0A854E393
Organism   Stenotrophomonas maltophilia strain WP1-W18-CRE-01     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3717511..3728884
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7X90_RS17210 (WP1W18C01_33640) sucD 3718414..3719289 (-) 876 WP_005410793.1 succinate--CoA ligase subunit alpha -
  H7X90_RS17215 (WP1W18C01_33650) sucC 3719311..3720480 (-) 1170 WP_004154430.1 ADP-forming succinate--CoA ligase subunit beta -
  H7X90_RS17220 (WP1W18C01_33660) - 3720837..3722450 (+) 1614 WP_005414304.1 ATP-binding protein -
  H7X90_RS17225 (WP1W18C01_33670) pilR 3722511..3723884 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  H7X90_RS17230 (WP1W18C01_33680) pilB 3724010..3725743 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H7X90_RS17235 (WP1W18C01_33690) pilA/pilAI 3725966..3726373 (-) 408 WP_099474769.1 pilin Machinery gene
  H7X90_RS17240 (WP1W18C01_33700) - 3726526..3726963 (-) 438 WP_183153553.1 pilin -
  H7X90_RS17245 (WP1W18C01_33710) pilC 3727316..3728575 (+) 1260 WP_099474767.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49515.76 Da        Isoelectric Point: 6.4407

>NTDB_id=75777 H7X90_RS17225 WP_005410795.1 3722511..3723884(+) (pilR) [Stenotrophomonas maltophilia strain WP1-W18-CRE-01]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=75777 H7X90_RS17225 WP_005410795.1 3722511..3723884(+) (pilR) [Stenotrophomonas maltophilia strain WP1-W18-CRE-01]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCCGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCAACG
CCGAACAGGGCGGGCGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCTCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGTGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCACACGCTGACAAGCCTGGCCTGTTCCAGGCTGCGCACGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCGCTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATCCTCTCGGCCACCCACAAGGACTTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCACTGCGCGAACGCCGCCAGGACCTGCCCGAA
CTGGCCGCCGCCGTGCTGGCCCGCCTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCCTCGGCGCTGGAAGC
ACTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAGAACATCCTGGAACGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCACAGCACGCGCCGCGTGCTCCCGGCAGTGCCGCGCCCGCCGAAGCCGTG
GCCGACCTGCAGCCGGGCAGCGCCGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(414-454)

Response regulator receiver domain (Response_reg)

(8-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A854E393

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

63.656

99.344

0.632
  pilR Acinetobacter baumannii strain A118

48.38

100

0.49
  luxO Vibrio cholerae strain A1552

37.079

97.374

0.361

Multiple sequence alignment