Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OP486_RS11310 Genome accession   NZ_CP110856
Coordinates   2376003..2376443 (+) Length   146 a.a.
NCBI ID   WP_073540976.1    Uniprot ID   A0A1L5FE87
Organism   Clostridium kluyveri strain BJN0002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2371003..2381443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OP486_RS11285 (OP486_11290) ytvI 2371219..2372274 (-) 1056 WP_073540984.1 sporulation integral membrane protein YtvI -
  OP486_RS11290 (OP486_11295) - 2372901..2374283 (-) 1383 WP_207649431.1 DDE-type integrase/transposase/recombinase -
  OP486_RS11295 (OP486_11300) - 2374505..2375359 (+) 855 WP_073540980.1 mechanosensitive ion channel family protein -
  OP486_RS11300 (OP486_11305) - 2375364..2375573 (+) 210 WP_073540978.1 DUF951 domain-containing protein -
  OP486_RS11305 (OP486_11310) rpsF 2375703..2375990 (+) 288 WP_012104223.1 30S ribosomal protein S6 -
  OP486_RS11310 (OP486_11315) ssbA 2376003..2376443 (+) 441 WP_073540976.1 single-stranded DNA-binding protein Machinery gene
  OP486_RS11315 (OP486_11320) rpsR 2376465..2376719 (+) 255 WP_012104221.1 30S ribosomal protein S18 -
  OP486_RS11320 (OP486_11325) - 2376863..2377180 (+) 318 WP_073540974.1 MazG-like family protein -
  OP486_RS11325 (OP486_11330) - 2377192..2378178 (+) 987 WP_073540972.1 YybS family protein -
  OP486_RS11330 (OP486_11335) - 2378197..2380182 (+) 1986 WP_073540970.1 DHH family phosphoesterase -
  OP486_RS11335 (OP486_11340) rplI 2380183..2380626 (+) 444 WP_012104217.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 16532.55 Da        Isoelectric Point: 4.6223

>NTDB_id=756685 OP486_RS11310 WP_073540976.1 2376003..2376443(+) (ssbA) [Clostridium kluyveri strain BJN0002]
MNKVVLIGRLTKDPELRFTPGMGKAVTTFTIAVDRRFTRDGQREADFIPIVVWGKQAESTANYMSKGKLIGISGRIQTRS
YESRDGIRKYVTEVIAEEVQFLEWGQKSVRDNNTEVLSEDFGKDSSFNEDIYGEDITPVDEGDIPF

Nucleotide


Download         Length: 441 bp        

>NTDB_id=756685 OP486_RS11310 WP_073540976.1 2376003..2376443(+) (ssbA) [Clostridium kluyveri strain BJN0002]
TTGAATAAAGTTGTTTTAATTGGAAGATTAACTAAAGATCCGGAATTAAGATTTACACCAGGAATGGGAAAAGCAGTTAC
TACCTTTACTATAGCTGTTGATAGAAGATTTACTAGAGATGGACAGAGAGAGGCAGACTTTATTCCCATTGTTGTATGGG
GAAAACAAGCTGAATCTACTGCTAATTATATGAGTAAAGGAAAGCTTATAGGCATTAGTGGCAGAATCCAAACTAGAAGT
TATGAATCTAGAGACGGTATTAGAAAATATGTTACTGAAGTTATTGCAGAAGAAGTCCAATTTCTTGAATGGGGACAGAA
GTCTGTAAGAGACAATAACACTGAAGTTCTATCTGAAGATTTTGGTAAAGACTCAAGTTTTAATGAAGATATCTACGGAG
AAGATATTACTCCAGTTGATGAGGGAGATATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L5FE87

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

45.349

100

0.534
  ssbB Streptococcus sobrinus strain NIDR 6715-7

52.632

78.082

0.411
  ssbA Streptococcus mutans UA159

49.138

79.452

0.39
  ssbB/cilA Streptococcus mitis NCTC 12261

48.696

78.767

0.384
  ssb Latilactobacillus sakei subsp. sakei 23K

53.846

71.233

0.384
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.398

70.548

0.377
  ssbB/cilA Streptococcus pneumoniae TIGR4

47.826

78.767

0.377
  ssbB/cilA Streptococcus mitis SK321

46.957

78.767

0.37
  ssbB/cilA Streptococcus pneumoniae Rx1

46.957

78.767

0.37
  ssbB/cilA Streptococcus pneumoniae D39

46.957

78.767

0.37
  ssbB/cilA Streptococcus pneumoniae R6

46.957

78.767

0.37