Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ONZ66_RS02025 Genome accession   NZ_CP110647
Coordinates   407058..408299 (-) Length   413 a.a.
NCBI ID   WP_059113460.1    Uniprot ID   A0AAP3UVF0
Organism   Aeromonas salmonicida strain ZAS     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 402058..413299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONZ66_RS02000 (ONZ66_02000) mutT 404036..404443 (+) 408 WP_099994491.1 8-oxo-dGTP diphosphatase MutT -
  ONZ66_RS02005 (ONZ66_02005) yacG 404521..404715 (-) 195 WP_059113458.1 DNA gyrase inhibitor YacG -
  ONZ66_RS02010 (ONZ66_02010) zapD 404725..405447 (-) 723 WP_021140336.1 cell division protein ZapD -
  ONZ66_RS02015 (ONZ66_02015) coaE 405485..406099 (-) 615 WP_271774095.1 dephospho-CoA kinase -
  ONZ66_RS02020 (ONZ66_02020) pilD 406119..406994 (-) 876 WP_125729778.1 prepilin peptidase Machinery gene
  ONZ66_RS02025 (ONZ66_02025) pilC 407058..408299 (-) 1242 WP_059113460.1 type II secretion system F family protein Machinery gene
  ONZ66_RS02030 (ONZ66_02030) pilB 408428..410134 (-) 1707 WP_271774096.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  ONZ66_RS02035 (ONZ66_02035) - 410137..410574 (-) 438 WP_271774097.1 pilin -
  ONZ66_RS02040 (ONZ66_02040) nadC 410910..411767 (-) 858 WP_271774098.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ONZ66_RS02045 (ONZ66_02045) - 411772..412242 (-) 471 WP_011898292.1 retropepsin-like aspartic protease family protein -
  ONZ66_RS02050 (ONZ66_02050) ampD 412392..412964 (+) 573 WP_271774954.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45324.44 Da        Isoelectric Point: 9.8834

>NTDB_id=755642 ONZ66_RS02025 WP_059113460.1 407058..408299(-) (pilC) [Aeromonas salmonicida strain ZAS]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=755642 ONZ66_RS02025 WP_059113460.1 407058..408299(-) (pilC) [Aeromonas salmonicida strain ZAS]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTGCAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GGGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACCACAATGCTCTCCGCCGGGGTACCTCTGGTACAGAGCCTGCAGATCATTGCCCGCAGCCATGAGAAAGCCGC
CATGCGCGAGCTGATGGGCCAGATCGCTGCCGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCGCTCTATTGCGATCTGGTGGAAGCAGGCGAGCAATCCGGCGCGCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCGGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATCTTCAAGAGCTTTGGCGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCTCGCTTCATGCAGAATTGGTGGTATGTGATCTTTGGCGGGATAGGG
CTTGGCATTTTCCTTTATGTAAGAGCCTGGCGCGCGTCCCAGAAAGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTAATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGTATGGTCGTTGCC
ATGTACCTGCCCATCTTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.535

97.821

0.455
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366