Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   ONZ54_RS02080 Genome accession   NZ_CP110645
Coordinates   416702..417943 (-) Length   413 a.a.
NCBI ID   WP_059113460.1    Uniprot ID   A0AAP3UVF0
Organism   Aeromonas salmonicida strain AS3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 411702..422943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONZ54_RS02050 (ONZ54_02050) - 412488..413672 (+) 1185 WP_271787345.1 tetratricopeptide repeat protein -
  ONZ54_RS02055 (ONZ54_02055) mutT 413681..414088 (+) 408 WP_099994491.1 8-oxo-dGTP diphosphatase MutT -
  ONZ54_RS02060 (ONZ54_02060) yacG 414166..414360 (-) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  ONZ54_RS02065 (ONZ54_02065) zapD 414370..415092 (-) 723 WP_005314166.1 cell division protein ZapD -
  ONZ54_RS02070 (ONZ54_02070) coaE 415130..415744 (-) 615 WP_271787346.1 dephospho-CoA kinase -
  ONZ54_RS02075 (ONZ54_02075) pilD 415763..416638 (-) 876 WP_125729778.1 prepilin peptidase Machinery gene
  ONZ54_RS02080 (ONZ54_02080) pilC 416702..417943 (-) 1242 WP_059113460.1 type II secretion system F family protein Machinery gene
  ONZ54_RS02085 (ONZ54_02085) pilB 418072..419778 (-) 1707 WP_058394588.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  ONZ54_RS02090 (ONZ54_02090) - 419781..420218 (-) 438 WP_271787347.1 pilin -
  ONZ54_RS02095 (ONZ54_02095) nadC 420552..421409 (-) 858 WP_219614709.1 carboxylating nicotinate-nucleotide diphosphorylase -
  ONZ54_RS02100 (ONZ54_02100) - 421414..421883 (-) 470 Protein_392 retropepsin-like aspartic protease family protein -
  ONZ54_RS02105 (ONZ54_02105) ampD 422033..422605 (+) 573 WP_271788237.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45324.44 Da        Isoelectric Point: 9.8834

>NTDB_id=755613 ONZ54_RS02080 WP_059113460.1 416702..417943(-) (pilC) [Aeromonas salmonicida strain AS3]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=755613 ONZ54_RS02080 WP_059113460.1 416702..417943(-) (pilC) [Aeromonas salmonicida strain AS3]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTGCAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GAGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACCACAATGCTCTCCGCCGGGGTACCTCTGGTACAGAGCCTGCAGATCATAGCCCGCAGCCATGAAAAAGCCGC
CATGCGCGAGCTGATGGGCCAGATCGCTGCCGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCGCTCTATTGCGATCTGGTGGAAGCGGGCGAGCAATCCGGCGCCCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAATCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTATCCCGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATCTTCAAGAGCTTTGGTGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCCCGCTTCATGCAGAATTGGTGGTATGTGATTTTTGGCGGGATAGGG
CTTGGCATTTTCCTTTATGTACGAGCATGGCGCGCATCCCAGAAAGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTCTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATTAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGATATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGACT
TGGTCGACGGCCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGTATGGTCGTTGCC
ATGTACCTGCCCATCTTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.535

97.821

0.455
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366