Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   ONZ54_RS02075 Genome accession   NZ_CP110645
Coordinates   415763..416638 (-) Length   291 a.a.
NCBI ID   WP_125729778.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain AS3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410763..421638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONZ54_RS02050 (ONZ54_02050) - 412488..413672 (+) 1185 WP_271787345.1 tetratricopeptide repeat protein -
  ONZ54_RS02055 (ONZ54_02055) mutT 413681..414088 (+) 408 WP_099994491.1 8-oxo-dGTP diphosphatase MutT -
  ONZ54_RS02060 (ONZ54_02060) yacG 414166..414360 (-) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  ONZ54_RS02065 (ONZ54_02065) zapD 414370..415092 (-) 723 WP_005314166.1 cell division protein ZapD -
  ONZ54_RS02070 (ONZ54_02070) coaE 415130..415744 (-) 615 WP_271787346.1 dephospho-CoA kinase -
  ONZ54_RS02075 (ONZ54_02075) pilD 415763..416638 (-) 876 WP_125729778.1 prepilin peptidase Machinery gene
  ONZ54_RS02080 (ONZ54_02080) pilC 416702..417943 (-) 1242 WP_059113460.1 type II secretion system F family protein Machinery gene
  ONZ54_RS02085 (ONZ54_02085) pilB 418072..419778 (-) 1707 WP_058394588.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  ONZ54_RS02090 (ONZ54_02090) - 419781..420218 (-) 438 WP_271787347.1 pilin -
  ONZ54_RS02095 (ONZ54_02095) nadC 420552..421409 (-) 858 WP_219614709.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32437.73 Da        Isoelectric Point: 7.0169

>NTDB_id=755612 ONZ54_RS02075 WP_125729778.1 415763..416638(-) (pilD) [Aeromonas salmonicida strain AS3]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSSDTPQPEADERYNLMVPRSCCPHCNH
PITALENIPLLSWLWLKGRCRGCQAAISARYPLVELLTALLSVVVAMTLTPGWGTLAALLLTWVLVALTFIDLDKMLLPD
QLTLPLLWGGLLFNLLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS
LVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTIL

Nucleotide


Download         Length: 876 bp        

>NTDB_id=755612 ONZ54_RS02075 WP_125729778.1 415763..416638(-) (pilD) [Aeromonas salmonicida strain AS3]
ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG
CAGCTTTCTCAACGTGGTGATCCACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA
GTTCAGACACGCCGCAGCCAGAAGCTGACGAGCGCTACAATCTGATGGTGCCGCGCTCCTGCTGCCCTCACTGCAATCAC
CCCATAACGGCCCTGGAAAACATTCCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGCTGCCAGGCCGCCAT
TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCTCTGCTCTCTGTGGTGGTTGCCATGACGCTCACCCCTGGCTGGG
GCACGCTGGCTGCCCTCCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC
CAGCTCACCTTGCCGCTACTGTGGGGCGGGCTGCTGTTCAACCTGCTTGGCGGATACGTGCCTCTCGGCGATGCTGTCAT
CGGCGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGAGGGCATGGGCT
ATGGGGACTTCAAACTGCTGGCAGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTACTGCTGCTCTCTTCT
CTGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGCAAACCCATCCCCTTTGGCCCCTA
TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTATCCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.111

98.969

0.605
  pilD Vibrio campbellii strain DS40M4

55.556

98.969

0.55
  pilD Acinetobacter baumannii D1279779

55.019

92.44

0.509
  pilD Acinetobacter nosocomialis M2

55.019

92.44

0.509
  pilD Neisseria gonorrhoeae MS11

50.373

92.096

0.464