Detailed information NTG0753411

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: OMP39_RS02335
• Genome accession: NZ_CP110257
• Coordinates: 514300..515394 (-)
• Length: 364 a.a.
• NCBI ID: WP_264893205.1
• Uniprot ID: -
• Organism: Schlegelella aquatica strain LMG 23380
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 509300..520394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OMP39_RS02305 (OMP39_02305)	-	510196..511074 (+)	879	WP_264893199.1	ATP-binding protein	-
OMP39_RS02310 (OMP39_02310)	-	511071..511523 (+)	453	WP_264893200.1	NUDIX domain-containing protein	-
OMP39_RS02315 (OMP39_02315)	-	511612..511848 (-)	237	WP_264893201.1	DNA gyrase inhibitor YacG	-
OMP39_RS02320 (OMP39_02320)	zapD	511850..512602 (-)	753	WP_264893202.1	cell division protein ZapD	-
OMP39_RS02325 (OMP39_02325)	coaE	512771..513373 (-)	603	WP_264893203.1	dephospho-CoA kinase	-
OMP39_RS02330 (OMP39_02330)	pilD	513436..514293 (-)	858	WP_264893204.1	A24 family peptidase	Machinery gene
OMP39_RS02335 (OMP39_02335)	pilC	514300..515394 (-)	1095	WP_264893205.1	type II secretion system F family protein	Machinery gene
OMP39_RS02340 (OMP39_02340)	pilB	515435..517150 (-)	1716	WP_264893206.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OMP39_RS02345 (OMP39_02345)	recD	517348..519186 (-)	1839	WP_264893207.1	exodeoxyribonuclease V subunit alpha	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 39206.13 Da
• Isoelectric Point: 9.5264

>NTDB_id=753411 OMP39_RS02335 WP_264893205.1 514300..515394(-) (pilC) [Schlegelella aquatica strain LMG 23380]
MATAAAAKKVQDFVFEWEGKDRNGKPVRGEMRAGGEAMVSASLRRQGVLVTKVKKRRLSGGKKITQKDIAVFTRQLATMM
RAGVPLLQAFDIVGRGASNPRLTRLLNDIRSDVETGTSLSAAFRKHPLHFDALYCNLVEAGEAGGILETLLDRLAQYQEK
TLEIKRKIKSALIYPVAVLVVAFVVVAIIMIFVIPAFKDIFTSFGADLPAPTLLVIAMSEFFGPLVHKAAVARWTRTLAT
MFSAGVPLVEALDSVGGASGNAVFLEATEKIQKDVATGSSLTMSMQQTGVFPTMVLQMCAIGEESGSIDHMLNKAAEFYE
AEVDEAVKGLSSLMEPIIIVVLGTLIGGIVVAMYLPIFKLGQVV

Nucleotide

• Length: 1095 bp

>NTDB_id=753411 OMP39_RS02335 WP_264893205.1 514300..515394(-) (pilC) [Schlegelella aquatica strain LMG 23380]
ATGGCAACGGCTGCTGCGGCAAAGAAGGTTCAGGATTTCGTATTCGAGTGGGAGGGCAAGGACCGCAACGGCAAACCGGT
GCGCGGCGAGATGCGCGCCGGCGGCGAAGCCATGGTCAGCGCCAGCCTGCGTCGCCAGGGCGTCCTGGTCACCAAGGTGA
AGAAGCGTCGCCTGAGCGGCGGCAAGAAGATCACCCAGAAGGACATCGCCGTCTTCACCCGCCAGCTCGCGACGATGATG
CGCGCCGGCGTGCCCCTGCTGCAGGCCTTCGACATCGTGGGCCGCGGAGCCTCCAACCCGCGCCTGACGCGCCTGCTCAA
CGACATCCGCAGCGACGTCGAGACGGGCACGAGTCTTTCGGCCGCCTTCCGCAAGCATCCGCTCCACTTCGACGCGCTCT
ACTGCAACCTGGTGGAGGCCGGCGAGGCGGGCGGCATTCTCGAGACGCTGCTCGACCGGCTGGCCCAGTACCAGGAAAAG
ACACTCGAGATCAAGCGCAAGATCAAGTCCGCGCTGATCTACCCGGTCGCGGTGCTGGTGGTGGCCTTCGTCGTGGTCGC
GATCATCATGATCTTCGTGATCCCCGCGTTCAAGGACATCTTCACCTCGTTCGGTGCCGACCTGCCCGCGCCCACGCTGC
TCGTGATCGCGATGTCCGAGTTCTTCGGCCCGCTGGTGCACAAGGCCGCGGTGGCGCGCTGGACGCGCACGCTGGCCACG
ATGTTTTCCGCCGGCGTGCCGCTCGTCGAGGCGCTCGACTCGGTCGGCGGTGCGTCGGGCAACGCGGTCTTCCTCGAAGC
CACGGAGAAGATCCAGAAGGACGTGGCCACCGGCTCCAGCCTGACCATGTCGATGCAGCAGACCGGCGTCTTCCCGACCA
TGGTGCTGCAGATGTGCGCCATCGGCGAGGAGTCCGGCTCGATCGACCACATGCTCAACAAGGCGGCCGAGTTCTACGAG
GCCGAGGTGGACGAGGCGGTCAAGGGCCTGTCGAGCCTCATGGAGCCCATCATCATCGTCGTGCTGGGCACGCTCATCGG
CGGCATCGTCGTGGCGATGTACCTGCCCATCTTCAAGCTCGGCCAGGTGGTCTGA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (72-195)

• Type II secretion system (T2SS), protein F (T2SSF) (234-356)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	50	100	0.555
pilG	Neisseria gonorrhoeae MS11	49	100	0.538
pilG	Neisseria meningitidis 44/76-A	49	100	0.538
pilC	Legionella pneumophila strain ERS1305867	48.485	100	0.527
pilC	Acinetobacter baumannii D1279779	47.174	100	0.527
pilC	Acinetobacter baylyi ADP1	46.929	100	0.525
pilC	Vibrio cholerae strain A1552	39.646	100	0.431
pilC	Vibrio campbellii strain DS40M4	39.141	100	0.426
pilC	Thermus thermophilus HB27	38.442	100	0.42