Detailed information NTG0753410

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OMP39_RS02330
• Genome accession: NZ_CP110257
• Coordinates: 513436..514293 (-)
• Length: 285 a.a.
• NCBI ID: WP_264893204.1
• Uniprot ID: -
• Organism: Schlegelella aquatica strain LMG 23380
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 508436..519293

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OMP39_RS02295 (OMP39_02295)	slmA	508638..509225 (+)	588	WP_264894622.1	nucleoid occlusion factor SlmA	-
OMP39_RS02300 (OMP39_02300)	pdeM	509287..509982 (+)	696	WP_264893198.1	ligase-associated DNA damage response endonuclease PdeM	-
OMP39_RS02305 (OMP39_02305)	-	510196..511074 (+)	879	WP_264893199.1	ATP-binding protein	-
OMP39_RS02310 (OMP39_02310)	-	511071..511523 (+)	453	WP_264893200.1	NUDIX domain-containing protein	-
OMP39_RS02315 (OMP39_02315)	-	511612..511848 (-)	237	WP_264893201.1	DNA gyrase inhibitor YacG	-
OMP39_RS02320 (OMP39_02320)	zapD	511850..512602 (-)	753	WP_264893202.1	cell division protein ZapD	-
OMP39_RS02325 (OMP39_02325)	coaE	512771..513373 (-)	603	WP_264893203.1	dephospho-CoA kinase	-
OMP39_RS02330 (OMP39_02330)	pilD	513436..514293 (-)	858	WP_264893204.1	A24 family peptidase	Machinery gene
OMP39_RS02335 (OMP39_02335)	pilC	514300..515394 (-)	1095	WP_264893205.1	type II secretion system F family protein	Machinery gene
OMP39_RS02340 (OMP39_02340)	pilB	515435..517150 (-)	1716	WP_264893206.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OMP39_RS02345 (OMP39_02345)	recD	517348..519186 (-)	1839	WP_264893207.1	exodeoxyribonuclease V subunit alpha	-

Sequence

Protein

• Length: 285 a.a.
• Molecular weight: 31123.98 Da
• Isoelectric Point: 8.3473

>NTDB_id=753410 OMP39_RS02330 WP_264893204.1 513436..514293(-) (pilD) [Schlegelella aquatica strain LMG 23380]
MDQESLRWWLSPATLGLLGLVIGSFLNVVIHRLPLMLERQWRRDSAEMLGQPLPEEGPPLNLVRPRSRCPHCERPVRWHE
NIPVLGWLLLRGRCAGCRQPISLRYPVIELLTGALFALAAWRVGPQLPVLLWCAFLAVLVALAFIDWDTTLLPDDLTQPL
LWGGLIVSALGWTVPLPSALWGAVAGYLALWGVYWLFKLTTGKEGMGYGDFKLLAAIGAWLGPSMLLPVLIGASVLGTAV
GLVMKASGALREGRYVPFGPFLAGAGGAVFLLGTQTVLEWLGFGF

Nucleotide

• Length: 858 bp

>NTDB_id=753410 OMP39_RS02330 WP_264893204.1 513436..514293(-) (pilD) [Schlegelella aquatica strain LMG 23380]
ATGGACCAGGAATCCTTGCGCTGGTGGCTCTCGCCGGCCACCTTGGGCCTGCTCGGCCTCGTCATCGGCAGCTTCCTCAA
CGTGGTGATCCACCGCCTGCCCCTCATGCTGGAGCGGCAGTGGCGGCGCGACAGCGCCGAGATGCTCGGCCAGCCGCTGC
CCGAGGAAGGGCCGCCGCTCAACCTGGTCCGACCGCGCTCGCGCTGCCCGCACTGCGAGCGTCCGGTGCGCTGGCACGAG
AACATCCCGGTGCTCGGCTGGCTGCTGCTGCGCGGCCGCTGCGCCGGCTGCCGCCAGCCGATCTCGCTGCGCTACCCGGT
CATCGAGCTGCTCACGGGCGCGCTGTTCGCGCTGGCCGCCTGGCGCGTCGGGCCGCAGCTGCCGGTGCTGCTGTGGTGCG
CCTTCCTGGCCGTGCTGGTCGCGCTGGCCTTCATCGACTGGGACACCACCTTGTTGCCCGACGACCTCACCCAGCCGCTG
CTGTGGGGCGGGTTGATCGTCTCCGCGCTGGGCTGGACGGTGCCGCTGCCTTCGGCGCTGTGGGGCGCGGTGGCCGGCTA
TCTCGCGCTGTGGGGGGTGTACTGGCTCTTCAAACTCACCACCGGCAAGGAAGGCATGGGCTACGGCGACTTCAAGCTGC
TCGCGGCCATCGGCGCGTGGCTGGGGCCCTCGATGCTCTTGCCGGTGCTGATCGGCGCGTCGGTGCTCGGCACGGCCGTC
GGTCTCGTGATGAAGGCCAGCGGCGCCTTGCGCGAAGGCCGCTATGTGCCTTTCGGCCCCTTCCTGGCGGGCGCGGGCGG
CGCCGTCTTCCTCCTCGGCACGCAGACCGTGCTGGAATGGCTGGGCTTCGGGTTCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-122)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.355	98.947	0.498
pilD	Vibrio campbellii strain DS40M4	47.826	96.842	0.463
pilD	Neisseria gonorrhoeae MS11	49.219	89.825	0.442
pilD	Acinetobacter baumannii D1279779	45.926	94.737	0.435
pilD	Acinetobacter nosocomialis M2	45.556	94.737	0.432