Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OKW95_RS17645 Genome accession   NZ_CP110254
Coordinates   3749728..3750954 (+) Length   408 a.a.
NCBI ID   WP_199944927.1    Uniprot ID   -
Organism   Acinetobacter oleivorans strain S4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3744728..3755954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OKW95_RS17610 (OKW95_17615) rimP 3745396..3745923 (-) 528 WP_004795010.1 ribosome maturation factor RimP -
  OKW95_RS17630 (OKW95_17635) secG 3746560..3746889 (-) 330 WP_004795012.1 preprotein translocase subunit SecG -
  OKW95_RS17635 (OKW95_17640) tpiA 3746902..3747696 (-) 795 WP_013199077.1 triose-phosphate isomerase -
  OKW95_RS17640 (OKW95_17645) pilB 3747988..3749700 (+) 1713 WP_192835760.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OKW95_RS17645 (OKW95_17650) pilC 3749728..3750954 (+) 1227 WP_199944927.1 type II secretion system F family protein Machinery gene
  OKW95_RS17650 (OKW95_17655) pilD 3750954..3751814 (+) 861 WP_013199081.1 prepilin peptidase Machinery gene
  OKW95_RS17655 (OKW95_17660) coaE 3751816..3752412 (+) 597 WP_013199082.1 dephospho-CoA kinase -
  OKW95_RS17660 (OKW95_17665) - 3752409..3753323 (-) 915 WP_013199083.1 DMT family transporter -
  OKW95_RS17665 (OKW95_17670) rlmB 3753359..3754108 (-) 750 WP_004795029.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  OKW95_RS17670 (OKW95_17675) - 3754211..3754537 (-) 327 WP_004795031.1 pyrimidine/purine nucleoside phosphorylase -
  OKW95_RS17675 (OKW95_17680) - 3754614..3755924 (-) 1311 WP_323739766.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44990.44 Da        Isoelectric Point: 9.9566

>NTDB_id=753396 OKW95_RS17645 WP_199944927.1 3749728..3750954(+) (pilC) [Acinetobacter oleivorans strain S4]
MTVKKAQLMPTFAYDGVDRKGVKIKGELPAKNMALAKVTLRKQGVTVRNIREKRKNILEGLFKKKVSTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPAMREVVLGIKGEVEGGSTFASALRKYPQHFDKLFCSLVESGEQSGALETMLDRVAIYK
EKSELLKQKIKKAMKYPATVIVVAVVVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSKWMQEYWFILIIVIGAIIA
AFLEAKKRSKKFRDSLDKLALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGATNNIIYEQAVMKIREDVA
TGQQLQFAMRVSNRFPSMAIQMVAIGEESGALDSMLDKVATYYENEVDNAVDGLTSMMEPLIMAILGVLVGGLVVAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=753396 OKW95_RS17645 WP_199944927.1 3749728..3750954(+) (pilC) [Acinetobacter oleivorans strain S4]
ATGACTGTCAAAAAGGCACAATTGATGCCGACTTTTGCTTATGATGGGGTTGACCGTAAAGGCGTAAAAATTAAGGGGGA
ACTTCCGGCTAAAAATATGGCTTTAGCCAAAGTCACCCTACGCAAGCAAGGTGTAACTGTTCGTAATATTCGGGAAAAGC
GTAAAAATATTCTTGAAGGTTTATTTAAGAAAAAAGTATCAACGCTCGATATCACGATTTTCACGCGACAACTTGCAACT
ATGATGAAAGCTGGTGTCCCACTGGTACAAGGTTTTGAAATTGTGGCAGAAGGTCTAGAAAACCCAGCTATGCGCGAGGT
GGTACTCGGTATTAAAGGTGAAGTTGAAGGTGGTAGTACTTTTGCTTCAGCTCTAAGAAAGTATCCTCAGCACTTCGATA
AACTGTTTTGCTCGCTTGTAGAATCTGGCGAACAGTCTGGTGCGCTTGAAACCATGCTGGACCGCGTGGCAATTTACAAA
GAAAAAAGTGAATTGCTTAAGCAGAAAATTAAGAAAGCTATGAAATATCCAGCAACGGTTATTGTGGTTGCGGTGGTTGT
TACCATTATTTTGATGGTTAAAGTAGTTCCCGTCTTCCAAGATCTGTTTTCTTCCTTTGGCGCAGATCTTCCTGCTTTTA
CACAAATGGTCGTAAATATGTCGAAATGGATGCAGGAATACTGGTTCATTCTGATTATTGTGATCGGTGCAATCATTGCA
GCATTTCTGGAAGCTAAAAAGCGCAGTAAAAAATTCCGTGATAGTTTAGACAAACTTGCCCTGAAACTACCGATCTTTGG
TGATCTGGTTTATAAGGCGATTATTGCGCGTTACAGCCGTACTTTAGCAACAACTTTTGCAGCTGGTGTTCCTCTCATTG
ATGCGCTTGAATCAACGGCTGGTGCAACCAATAATATTATTTACGAACAAGCTGTCATGAAAATTCGTGAAGATGTAGCT
ACAGGTCAACAACTCCAATTTGCGATGCGCGTTTCAAATCGTTTTCCATCTATGGCTATACAAATGGTCGCAATTGGTGA
AGAATCTGGTGCACTAGACAGCATGCTCGATAAAGTTGCAACCTACTATGAAAATGAAGTTGATAATGCCGTTGATGGCT
TAACTTCAATGATGGAACCTTTAATTATGGCAATTTTAGGGGTACTTGTAGGCGGTCTGGTTGTTGCTATGTATCTTCCA
ATTTTCCAAATGGGCTCAGTTGTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

96.324

100

0.963
  pilC Acinetobacter baylyi ADP1

85.539

100

0.855
  pilC Pseudomonas stutzeri DSM 10701

59.698

97.304

0.581
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.231

97.549

0.451
  pilG Neisseria meningitidis 44/76-A

46.231

97.549

0.451
  pilC Vibrio cholerae strain A1552

42.402

100

0.424
  pilC Vibrio campbellii strain DS40M4

40.587

100

0.407
  pilC Thermus thermophilus HB27

37.157

98.284

0.365