Detailed information NTG0753397

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OKW95_RS17650
• Genome accession: NZ_CP110254
• Coordinates: 3750954..3751814 (+)
• Length: 286 a.a.
• NCBI ID: WP_013199081.1
• Uniprot ID: -
• Organism: Acinetobacter oleivorans strain S4
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3745954..3756814

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OKW95_RS17630 (OKW95_17635)	secG	3746560..3746889 (-)	330	WP_004795012.1	preprotein translocase subunit SecG	-
OKW95_RS17635 (OKW95_17640)	tpiA	3746902..3747696 (-)	795	WP_013199077.1	triose-phosphate isomerase	-
OKW95_RS17640 (OKW95_17645)	pilB	3747988..3749700 (+)	1713	WP_192835760.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OKW95_RS17645 (OKW95_17650)	pilC	3749728..3750954 (+)	1227	WP_199944927.1	type II secretion system F family protein	Machinery gene
OKW95_RS17650 (OKW95_17655)	pilD	3750954..3751814 (+)	861	WP_013199081.1	prepilin peptidase	Machinery gene
OKW95_RS17655 (OKW95_17660)	coaE	3751816..3752412 (+)	597	WP_013199082.1	dephospho-CoA kinase	-
OKW95_RS17660 (OKW95_17665)	-	3752409..3753323 (-)	915	WP_013199083.1	DMT family transporter	-
OKW95_RS17665 (OKW95_17670)	rlmB	3753359..3754108 (-)	750	WP_004795029.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
OKW95_RS17670 (OKW95_17675)	-	3754211..3754537 (-)	327	WP_004795031.1	pyrimidine/purine nucleoside phosphorylase	-
OKW95_RS17675 (OKW95_17680)	-	3754614..3755924 (-)	1311	WP_323739766.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32105.54 Da
• Isoelectric Point: 6.8115

>NTDB_id=753397 OKW95_RS17650 WP_013199081.1 3750954..3751814(+) (pilD) [Acinetobacter oleivorans strain S4]
MQEIIAYFIQNLTALYIAVALLSLCIGSFLNVVIYRTPKMMEQDWQQECQILLNPEQPIIDHEKLTLSKPASSCPECHQP
IRWYQNIPVISWLVLKGKCGHCQHPISIRYPAVELLTMVCSLVVVMMFGPTIQMLLGLVLTWVLITLTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=753397 OKW95_RS17650 WP_013199081.1 3750954..3751814(+) (pilD) [Acinetobacter oleivorans strain S4]
ATGCAAGAAATTATTGCTTATTTTATTCAAAACTTAACTGCACTTTATATTGCAGTTGCATTATTGAGCCTATGTATTGG
TAGCTTTCTGAATGTGGTGATTTATCGCACCCCCAAAATGATGGAACAAGATTGGCAGCAAGAATGTCAAATACTACTCA
ATCCTGAACAACCAATCATTGATCATGAAAAACTGACATTAAGTAAGCCTGCTTCATCATGTCCAGAGTGCCATCAGCCC
ATCCGTTGGTATCAAAATATCCCAGTCATCAGTTGGTTAGTTTTAAAAGGTAAATGTGGTCATTGCCAGCATCCTATTAG
CATTCGCTACCCAGCAGTTGAACTATTAACAATGGTATGTTCACTGGTTGTGGTCATGATGTTTGGTCCAACCATTCAAA
TGCTTTTGGGGCTAGTCCTGACTTGGGTCCTGATTACTCTCACCTTTATAGACTTTGATACTCAGCTGCTACCCGACCGT
TTTACCCTACCTTTGGCTGCGCTTGGTCTAGGCATTAACACCTTTAATATTTACACCTCACCTAACTCAGCCATTTGGGG
TTACCTGATTGGTTTTTTATGTCTTTGGATTGTGTATTACTTATTTAAAGTGATTACAGGCAAAGAAGGCATGGGCTACG
GTGACTTTAAATTACTTGCCGCATTAGGTGCGTGGATGGGGCCATTGATGCTGCCATTAATTGTGTTATTGTCATCTTTA
CTAGGTGCAATTATTGGCATCATTTTATTAAAATTACGCAATGACAATCAGCCCTTTGCCTTTGGGCCCTACATTGCCAT
TGCAGGTTGGGTTGCCTTTCTATGGGGTGATCAGATTATGAAAATCTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter nosocomialis M2	95.804	100	0.958
pilD	Acinetobacter baumannii D1279779	95.455	100	0.955
pilD	Vibrio cholerae strain A1552	52.206	95.105	0.497
pilD	Vibrio campbellii strain DS40M4	51.661	94.755	0.49
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441