Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OJY61_RS02240 Genome accession   NZ_CP110176
Coordinates   462201..463442 (-) Length   413 a.a.
NCBI ID   WP_125117059.1    Uniprot ID   A0AAE9PND0
Organism   Aeromonas caviae strain SVJ23     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 457201..468442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJY61_RS02210 (OJY61_05645) - 457995..459179 (+) 1185 WP_103858093.1 tetratricopeptide repeat protein -
  OJY61_RS02215 (OJY61_05650) mutT 459188..459592 (+) 405 WP_171864957.1 8-oxo-dGTP diphosphatase MutT -
  OJY61_RS02220 (OJY61_05655) yacG 459650..459844 (-) 195 WP_103858092.1 DNA gyrase inhibitor YacG -
  OJY61_RS02225 (OJY61_05660) zapD 459855..460577 (-) 723 WP_010675825.1 cell division protein ZapD -
  OJY61_RS02230 (OJY61_05665) coaE 460615..461229 (-) 615 WP_125117058.1 dephospho-CoA kinase -
  OJY61_RS02235 (OJY61_05670) pilD 461248..462120 (-) 873 WP_042649027.1 A24 family peptidase Machinery gene
  OJY61_RS02240 (OJY61_05675) pilC 462201..463442 (-) 1242 WP_125117059.1 type II secretion system F family protein Machinery gene
  OJY61_RS02245 (OJY61_05680) pilB 463570..465276 (-) 1707 WP_125117060.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  OJY61_RS02250 (OJY61_21895) - 465276..465734 (-) 459 WP_125117542.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OJY61_RS02255 (OJY61_21900) - 465820..466770 (+) 951 WP_064339816.1 IS1595-like element ISAeca5 family transposase -
  OJY61_RS02260 (OJY61_05690) nadC 467082..467945 (-) 864 WP_125117061.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OJY61_RS02265 (OJY61_05695) - 467949..468410 (-) 462 WP_371316622.1 TIGR02281 family clan AA aspartic protease -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45471.47 Da        Isoelectric Point: 9.9380

>NTDB_id=752877 OJY61_RS02240 WP_125117059.1 462201..463442(-) (pilC) [Aeromonas caviae strain SVJ23]
MATLAQKRNAPKKVFSYRWHGVNRKGQKVSGELQADSITTVKAELRKQGVNVTRVSKQSQGLFSKGGAKIKPMDIAVISR
QITTMLSAGVPLVQSLQIIARGHEKAAVRELIGQIAADVETGTPLSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
TIYREKNEALKSKIKKAMFYPSMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTRFVIAISRFMQEWWYAIFGGAA
LAVFLYVRAWRKSQKVRDNTDKFILTIPVVGNILHKAAMARFARTLSTTFSAGIPLVDALVSAAGASGNYVYRTAILAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVAAIFEQEVDDMVDGLTSLLEPIIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=752877 OJY61_RS02240 WP_125117059.1 462201..463442(-) (pilC) [Aeromonas caviae strain SVJ23]
ATGGCCACATTAGCTCAAAAACGCAACGCACCGAAAAAAGTCTTCTCCTACCGCTGGCACGGCGTCAACCGCAAGGGACA
GAAGGTCTCCGGCGAGCTGCAAGCCGACAGCATCACCACCGTCAAAGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
GGGTCAGCAAGCAGAGCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATCGCCGTCATCTCCCGC
CAGATCACCACCATGCTCTCCGCCGGCGTGCCTCTGGTGCAGAGTCTTCAGATCATTGCTCGCGGCCACGAGAAAGCGGC
GGTGCGCGAACTCATCGGCCAGATCGCCGCCGATGTGGAAACCGGCACCCCGCTCTCGGAGGCGTTGCGCCGCCATCCCC
GCCACTTCGACGACCTCTATTGCGACCTGGTCGAGGCCGGGGAGCAATCCGGTGCCCTGGAGACCATCTACGACCGTATC
ACCATCTACCGCGAGAAGAACGAAGCCCTCAAATCCAAGATCAAGAAGGCCATGTTCTATCCGTCCATGGTCATTCTGGT
GGCCATCGTCGTCACCTCCATCCTGCTGCTCTTCGTCATTCCCCAGTTCGAGGATATCTTCAAGAGCTTCGGTGCCGAGC
TGCCCGCCTTTACCCGGTTCGTCATCGCCATCTCCCGCTTTATGCAGGAGTGGTGGTACGCCATCTTTGGCGGCGCTGCT
CTCGCCGTCTTCCTCTATGTGCGGGCCTGGCGAAAATCCCAGAAGGTCAGGGACAACACGGACAAGTTCATCCTCACCAT
TCCCGTGGTGGGCAACATACTGCACAAGGCGGCCATGGCCCGCTTTGCCCGAACCCTCTCCACCACCTTCTCCGCCGGGA
TACCTCTGGTGGATGCCCTGGTGTCAGCGGCCGGCGCCTCTGGCAACTATGTCTATCGCACGGCCATCCTGGCCATTCGC
AACGAAGTGGTGGCTGGCATGCAGATCAACGTCGCCATGCGTACCGTGGATCTCTTCCCAGACATGGTGATCCAGATGGT
GATGATTGGTGAAGAGTCAGGCGCCATCGATGACATGCTCTCCAAGGTTGCCGCCATCTTCGAGCAGGAGGTGGACGACA
TGGTCGATGGCCTCACCAGCCTGCTCGAACCCATCATCATGGTGGTGCTCGGGGTGCTGGTCGGTGGCATGGTCGTCGCC
ATGTACCTCCCCATCTTCAAGCTGGGCTCTGTGATACACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.061

95.884

0.538
  pilC Acinetobacter baylyi ADP1

51.214

99.758

0.511
  pilC Legionella pneumophila strain ERS1305867

51.852

98.063

0.508
  pilC Acinetobacter baumannii D1279779

52.12

97.094

0.506
  pilC Vibrio cholerae strain A1552

47.368

96.61

0.458
  pilC Vibrio campbellii strain DS40M4

45.113

96.61

0.436
  pilG Neisseria meningitidis 44/76-A

41.085

93.705

0.385
  pilG Neisseria gonorrhoeae MS11

41.085

93.705

0.385
  pilC Thermus thermophilus HB27

38.5

96.852

0.373