Detailed information NTG0752876

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OJY61_RS02235
• Genome accession: NZ_CP110176
• Coordinates: 461248..462120 (-)
• Length: 290 a.a.
• NCBI ID: WP_042649027.1
• Uniprot ID: -
• Organism: Aeromonas caviae strain SVJ23
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 456248..467120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OJY61_RS02210 (OJY61_05645)	-	457995..459179 (+)	1185	WP_103858093.1	tetratricopeptide repeat protein	-
OJY61_RS02215 (OJY61_05650)	mutT	459188..459592 (+)	405	WP_171864957.1	8-oxo-dGTP diphosphatase MutT	-
OJY61_RS02220 (OJY61_05655)	yacG	459650..459844 (-)	195	WP_103858092.1	DNA gyrase inhibitor YacG	-
OJY61_RS02225 (OJY61_05660)	zapD	459855..460577 (-)	723	WP_010675825.1	cell division protein ZapD	-
OJY61_RS02230 (OJY61_05665)	coaE	460615..461229 (-)	615	WP_125117058.1	dephospho-CoA kinase	-
OJY61_RS02235 (OJY61_05670)	pilD	461248..462120 (-)	873	WP_042649027.1	A24 family peptidase	Machinery gene
OJY61_RS02240 (OJY61_05675)	pilC	462201..463442 (-)	1242	WP_125117059.1	type II secretion system F family protein	Machinery gene
OJY61_RS02245 (OJY61_05680)	pilB	463570..465276 (-)	1707	WP_125117060.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
OJY61_RS02250 (OJY61_21895)	-	465276..465734 (-)	459	WP_125117542.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OJY61_RS02255 (OJY61_21900)	-	465820..466770 (+)	951	WP_064339816.1	IS1595-like element ISAeca5 family transposase	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 32052.32 Da
• Isoelectric Point: 7.0918

>NTDB_id=752876 OJY61_RS02235 WP_042649027.1 461248..462120(-) (pilD) [Aeromonas caviae strain SVJ23]
MVPLIELAQGLPWLYLSLIFLFSLMIGSFLNVVIHRLPIMLEREWHADYRDYFGSEVATSPAEPYNLMVPRSRCPHCDHP
ISALENIPLLSWLWLKGRCRQCKAPISARYPLVELLTALLSVTVAATLTPGWGALAALALTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGHGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGIGLILLRNHHQGKPIPFGPYLAIAGWIALLWGDNITRWYLDIVL

Nucleotide

• Length: 873 bp

>NTDB_id=752876 OJY61_RS02235 WP_042649027.1 461248..462120(-) (pilD) [Aeromonas caviae strain SVJ23]
ATGGTGCCTCTGATCGAACTGGCCCAGGGCCTGCCCTGGCTCTATCTCTCCCTGATTTTTCTCTTCTCCCTGATGATTGG
CAGCTTCCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCATGCAGACTACCGTGATTACTTCG
GCAGCGAGGTTGCCACTTCCCCCGCCGAACCTTACAACCTGATGGTACCGCGCTCTCGCTGCCCCCACTGCGATCACCCC
ATAAGCGCGCTGGAGAACATCCCCCTGCTGAGCTGGCTCTGGCTCAAGGGACGCTGCCGACAATGCAAGGCGCCAATTTC
GGCCCGCTATCCCCTGGTCGAGCTGCTGACCGCCCTGTTGTCGGTCACCGTTGCGGCGACCCTCACTCCCGGCTGGGGAG
CCCTGGCAGCCCTCGCACTGACCTGGGTACTGGTGGCCCTCACCTTCATCGATCTGGACAAGATGCTGCTGCCGGACCAG
CTCACCCTGCCGCTGCTGTGGGGCGGTCTGTTGTTCAATCTGGCAGGCGGCTTTGTGCCGCTGGCCGATGCGGTGATCGG
CGCCATGGCTGGCTATCTGGTGCTCTGGAGTCTCTACTGGGCGTTCAAGCTGCTGACCGGCAAGGAGGGGATGGGTCATG
GCGACTTCAAGCTGCTGGCGGCACTCGGTGCCTGGCTGGGCTGGCAGGCGCTGCCCATAGTGCTGCTGCTCTCTTCACTG
GTCGGCGCCATCATCGGGATCGGACTTATCCTGCTGCGCAACCATCATCAGGGCAAACCCATCCCCTTTGGCCCCTACCT
CGCCATCGCGGGCTGGATAGCGCTGCTGTGGGGGGATAACATCACCCGCTGGTATCTGGACATCGTTCTCTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-126)

• Type IV leader peptidase family (Peptidase_A24) (139-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.404	98.276	0.603
pilD	Vibrio campbellii strain DS40M4	56.055	99.655	0.559
pilD	Acinetobacter nosocomialis M2	52.518	95.862	0.503
pilD	Acinetobacter baumannii D1279779	52.158	95.862	0.5
pilD	Neisseria gonorrhoeae MS11	49.049	90.69	0.445