Detailed information
Bioinformatically predicted
Overview
| Name | pilB | Type | Machinery gene |
| Locus tag | OJY61_RS02245 | Genome accession | NZ_CP110176 |
| Coordinates | 463570..465276 (-) | Length | 568 a.a. |
| NCBI ID | WP_125117060.1 | Uniprot ID | - |
| Organism | Aeromonas caviae strain SVJ23 | ||
| Function | power the assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| IS/Tn | 465820..466770 | 463570..465276 | flank | 544 |
Gene organization within MGE regions
Location: 463570..466770
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OJY61_RS02245 (OJY61_05680) | pilB | 463570..465276 (-) | 1707 | WP_125117060.1 | PilB family type IVa pilus assembly ATPase TapB | Machinery gene |
| OJY61_RS02250 (OJY61_21895) | - | 465276..465734 (-) | 459 | WP_125117542.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| OJY61_RS02255 (OJY61_21900) | - | 465820..466770 (+) | 951 | WP_064339816.1 | IS1595-like element ISAeca5 family transposase | - |
Sequence
Protein
Download Length: 568 a.a. Molecular weight: 62645.06 Da Isoelectric Point: 5.9400
>NTDB_id=752878 OJY61_RS02245 WP_125117060.1 463570..465276(-) (pilB) [Aeromonas caviae strain SVJ23]
MTSSLHSGLATSLAASSLLSEPDSQRYLSQARAQRKPFVTFLIENDILDSKALADFCELEYGVPLLDLAAFDLSEIPQKY
LNQKLIEKHHVLPIYTQGHTLYIAMSDPTNVSALEDFGFSFGLHTEALLVEEGKLTAAIGKLMESEQDTLGMDHIDEAEI
SELEVSDESSRLDESVNTADDDAPIVRYIHKIMMDAIKRGASDLHFEPYETKYRIRFRIDGILHEIATPPVNLANRFAAR
LKVMARLDIAERRLPQDGRIKLKISRSRSMDMRVNTLPTMWGEKVVIRLLDSSVSRLNLDQLGFDDRQKAQYLHALSKPQ
GMILVTGPTGSGKTVSLYTGLNILNTSEVNISTAEDPVEINLPGVNQVQINPKAGLTFASALRSFLRQDPDIVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSAAETLTRMMNMGVPAFNIASSVTLIMAQRLARKLCDHCKAPEVVPEAELLELGFT
QQQLAAGLRLFKPVGCKECSGGYRGRVGIYEIMLMSDNIAKLIMQGANSLQIAAIAQKEGMRTLRISGLEKARLGVTSLA
EINRITTN
MTSSLHSGLATSLAASSLLSEPDSQRYLSQARAQRKPFVTFLIENDILDSKALADFCELEYGVPLLDLAAFDLSEIPQKY
LNQKLIEKHHVLPIYTQGHTLYIAMSDPTNVSALEDFGFSFGLHTEALLVEEGKLTAAIGKLMESEQDTLGMDHIDEAEI
SELEVSDESSRLDESVNTADDDAPIVRYIHKIMMDAIKRGASDLHFEPYETKYRIRFRIDGILHEIATPPVNLANRFAAR
LKVMARLDIAERRLPQDGRIKLKISRSRSMDMRVNTLPTMWGEKVVIRLLDSSVSRLNLDQLGFDDRQKAQYLHALSKPQ
GMILVTGPTGSGKTVSLYTGLNILNTSEVNISTAEDPVEINLPGVNQVQINPKAGLTFASALRSFLRQDPDIVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSAAETLTRMMNMGVPAFNIASSVTLIMAQRLARKLCDHCKAPEVVPEAELLELGFT
QQQLAAGLRLFKPVGCKECSGGYRGRVGIYEIMLMSDNIAKLIMQGANSLQIAAIAQKEGMRTLRISGLEKARLGVTSLA
EINRITTN
Nucleotide
Download Length: 1707 bp
>NTDB_id=752878 OJY61_RS02245 WP_125117060.1 463570..465276(-) (pilB) [Aeromonas caviae strain SVJ23]
ATGACCTCTAGCCTCCATAGCGGCCTGGCAACCAGCCTGGCCGCTTCCTCCCTCCTCAGTGAGCCGGACTCACAGCGCTA
TCTGAGCCAGGCCAGGGCGCAGCGCAAGCCCTTTGTCACCTTCCTGATCGAAAATGACATCCTCGACAGCAAGGCGCTGG
CGGATTTCTGCGAGCTGGAGTATGGGGTACCTCTGCTGGATCTTGCCGCCTTCGATCTCTCCGAGATCCCGCAGAAGTAC
CTCAATCAGAAGCTTATCGAGAAGCATCATGTGCTGCCCATCTACACCCAGGGCCACACCCTCTACATCGCCATGTCGGA
CCCGACCAATGTGTCGGCCCTGGAGGATTTCGGCTTCAGCTTCGGCCTGCACACCGAGGCCTTGCTGGTCGAAGAGGGCA
AGCTCACCGCCGCCATCGGCAAGTTGATGGAGAGCGAGCAGGATACCCTGGGCATGGATCACATCGACGAGGCCGAAATC
TCGGAGCTCGAGGTCTCCGATGAGAGTTCCCGCCTCGACGAGAGCGTCAACACCGCCGACGACGATGCTCCCATCGTCAG
ATACATCCATAAAATCATGATGGACGCCATCAAGCGTGGCGCATCCGACCTGCATTTCGAACCCTATGAGACCAAGTACA
GGATCCGCTTCCGGATCGACGGCATACTGCACGAAATCGCCACCCCGCCGGTCAATCTGGCGAACCGTTTCGCGGCTCGC
TTAAAGGTAATGGCGCGGCTCGATATCGCCGAGCGGCGTCTGCCCCAGGATGGACGGATCAAGCTGAAGATCTCCCGCAG
CCGATCCATGGACATGCGGGTCAACACCCTGCCCACCATGTGGGGGGAGAAGGTCGTCATCCGCCTTCTGGACTCGTCAG
TATCTCGCCTCAACCTCGATCAACTCGGCTTCGACGATCGCCAGAAGGCGCAATACCTGCATGCACTCTCCAAGCCACAG
GGCATGATACTGGTCACGGGCCCCACGGGCTCGGGCAAGACGGTGTCGCTCTATACAGGTCTCAACATTCTCAATACCAG
CGAGGTCAACATCTCCACCGCCGAGGATCCGGTGGAGATCAACCTGCCCGGCGTCAACCAGGTGCAGATCAATCCCAAGG
CGGGGCTCACCTTCGCCAGCGCCCTGCGCTCCTTCCTGCGCCAGGATCCAGACATCGTCATGGTGGGCGAGATCCGGGAC
CTGGAAACCGCCGAGATTGCCATCAAAGCCGCCCAGACCGGTCACCTGGTGCTCTCCACCCTGCACACCAACTCGGCGGC
AGAAACGCTCACCCGGATGATGAACATGGGGGTGCCGGCCTTCAACATCGCCTCTTCGGTCACCCTCATCATGGCCCAGC
GCCTTGCCCGCAAACTCTGCGATCACTGCAAGGCGCCAGAAGTGGTGCCGGAAGCCGAGTTGCTGGAGCTGGGCTTCACC
CAGCAGCAACTGGCCGCCGGGTTGCGGCTGTTCAAGCCCGTGGGATGCAAGGAGTGCTCGGGAGGCTACAGAGGCCGGGT
CGGCATCTATGAGATCATGCTGATGTCCGACAACATCGCCAAACTCATCATGCAGGGAGCCAACTCGCTGCAGATTGCCG
CGATAGCCCAAAAAGAAGGGATGCGCACCCTGCGTATATCCGGCCTCGAGAAAGCGCGTCTTGGCGTCACCAGCCTGGCC
GAAATCAACAGGATCACCACCAACTGA
ATGACCTCTAGCCTCCATAGCGGCCTGGCAACCAGCCTGGCCGCTTCCTCCCTCCTCAGTGAGCCGGACTCACAGCGCTA
TCTGAGCCAGGCCAGGGCGCAGCGCAAGCCCTTTGTCACCTTCCTGATCGAAAATGACATCCTCGACAGCAAGGCGCTGG
CGGATTTCTGCGAGCTGGAGTATGGGGTACCTCTGCTGGATCTTGCCGCCTTCGATCTCTCCGAGATCCCGCAGAAGTAC
CTCAATCAGAAGCTTATCGAGAAGCATCATGTGCTGCCCATCTACACCCAGGGCCACACCCTCTACATCGCCATGTCGGA
CCCGACCAATGTGTCGGCCCTGGAGGATTTCGGCTTCAGCTTCGGCCTGCACACCGAGGCCTTGCTGGTCGAAGAGGGCA
AGCTCACCGCCGCCATCGGCAAGTTGATGGAGAGCGAGCAGGATACCCTGGGCATGGATCACATCGACGAGGCCGAAATC
TCGGAGCTCGAGGTCTCCGATGAGAGTTCCCGCCTCGACGAGAGCGTCAACACCGCCGACGACGATGCTCCCATCGTCAG
ATACATCCATAAAATCATGATGGACGCCATCAAGCGTGGCGCATCCGACCTGCATTTCGAACCCTATGAGACCAAGTACA
GGATCCGCTTCCGGATCGACGGCATACTGCACGAAATCGCCACCCCGCCGGTCAATCTGGCGAACCGTTTCGCGGCTCGC
TTAAAGGTAATGGCGCGGCTCGATATCGCCGAGCGGCGTCTGCCCCAGGATGGACGGATCAAGCTGAAGATCTCCCGCAG
CCGATCCATGGACATGCGGGTCAACACCCTGCCCACCATGTGGGGGGAGAAGGTCGTCATCCGCCTTCTGGACTCGTCAG
TATCTCGCCTCAACCTCGATCAACTCGGCTTCGACGATCGCCAGAAGGCGCAATACCTGCATGCACTCTCCAAGCCACAG
GGCATGATACTGGTCACGGGCCCCACGGGCTCGGGCAAGACGGTGTCGCTCTATACAGGTCTCAACATTCTCAATACCAG
CGAGGTCAACATCTCCACCGCCGAGGATCCGGTGGAGATCAACCTGCCCGGCGTCAACCAGGTGCAGATCAATCCCAAGG
CGGGGCTCACCTTCGCCAGCGCCCTGCGCTCCTTCCTGCGCCAGGATCCAGACATCGTCATGGTGGGCGAGATCCGGGAC
CTGGAAACCGCCGAGATTGCCATCAAAGCCGCCCAGACCGGTCACCTGGTGCTCTCCACCCTGCACACCAACTCGGCGGC
AGAAACGCTCACCCGGATGATGAACATGGGGGTGCCGGCCTTCAACATCGCCTCTTCGGTCACCCTCATCATGGCCCAGC
GCCTTGCCCGCAAACTCTGCGATCACTGCAAGGCGCCAGAAGTGGTGCCGGAAGCCGAGTTGCTGGAGCTGGGCTTCACC
CAGCAGCAACTGGCCGCCGGGTTGCGGCTGTTCAAGCCCGTGGGATGCAAGGAGTGCTCGGGAGGCTACAGAGGCCGGGT
CGGCATCTATGAGATCATGCTGATGTCCGACAACATCGCCAAACTCATCATGCAGGGAGCCAACTCGCTGCAGATTGCCG
CGATAGCCCAAAAAGAAGGGATGCGCACCCTGCGTATATCCGGCCTCGAGAAAGCGCGTCTTGGCGTCACCAGCCTGGCC
GAAATCAACAGGATCACCACCAACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilB | Acinetobacter baumannii D1279779 |
54.85 |
99.824 |
0.548 |
| pilB | Acinetobacter baylyi ADP1 |
54.049 |
100 |
0.54 |
| pilB | Legionella pneumophila strain ERS1305867 |
54.159 |
99.472 |
0.539 |
| pilB | Vibrio cholerae strain A1552 |
52.715 |
100 |
0.53 |
| pilB | Vibrio campbellii strain DS40M4 |
50 |
99.648 |
0.498 |
| pilB | Vibrio parahaemolyticus RIMD 2210633 |
49.556 |
99.12 |
0.491 |
| pilF | Neisseria gonorrhoeae MS11 |
46.277 |
99.296 |
0.46 |
| pilF | Thermus thermophilus HB27 |
40.113 |
93.486 |
0.375 |
| pilB/pilB1 | Synechocystis sp. PCC 6803 |
37.975 |
97.359 |
0.37 |