Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   OJ967_RS26480 Genome accession   NZ_CP110132
Coordinates   5487567..5487929 (-) Length   120 a.a.
NCBI ID   WP_053536875.1    Uniprot ID   -
Organism   Peribacillus frigoritolerans strain Q2H1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5482567..5492929
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJ967_RS26465 (OJ967_26470) - 5483509..5485125 (-) 1617 WP_057278170.1 ABC transporter substrate-binding protein -
  OJ967_RS26470 (OJ967_26475) - 5485168..5486136 (-) 969 WP_057278171.1 ABC transporter ATP-binding protein -
  OJ967_RS26475 (OJ967_26480) - 5486117..5487121 (-) 1005 WP_170946896.1 ABC transporter ATP-binding protein -
  OJ967_RS26480 (OJ967_26485) ssbB 5487567..5487929 (-) 363 WP_053536875.1 single-stranded DNA-binding protein Machinery gene
  OJ967_RS26485 (OJ967_26490) - 5488288..5488722 (+) 435 WP_034315749.1 YwpF family protein -
  OJ967_RS26490 (OJ967_26495) - 5488836..5489150 (-) 315 WP_264639888.1 hypothetical protein -
  OJ967_RS26495 (OJ967_26500) fabZ 5489427..5489855 (-) 429 WP_034315755.1 3-hydroxyacyl-ACP dehydratase FabZ -
  OJ967_RS26500 (OJ967_26505) - 5489984..5490238 (-) 255 WP_053087418.1 DNA-directed RNA polymerase subunit beta -
  OJ967_RS26505 (OJ967_26510) - 5490407..5491249 (-) 843 WP_264639889.1 flagellar hook-basal body protein -
  OJ967_RS26510 (OJ967_26515) - 5491298..5492137 (-) 840 WP_264639890.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13658.54 Da        Isoelectric Point: 9.6262

>NTDB_id=752615 OJ967_RS26480 WP_053536875.1 5487567..5487929(-) (ssbB) [Peribacillus frigoritolerans strain Q2H1]
MINQVTLVGRLTKDPELRYTPDGKAVSNITLAVNRNFRNTVGNYEADFVQCIIWKKSAENTAQYCKKGAIIGITGRIQTR
RYENQEGKYVYVTEVVSERVQFIGTKQNDGKPKDFEHIGL

Nucleotide


Download         Length: 363 bp        

>NTDB_id=752615 OJ967_RS26480 WP_053536875.1 5487567..5487929(-) (ssbB) [Peribacillus frigoritolerans strain Q2H1]
ATGATTAACCAAGTTACCCTCGTCGGCAGGCTTACGAAGGATCCAGAATTAAGATACACACCTGATGGCAAGGCTGTTTC
CAATATCACATTAGCAGTCAACCGGAACTTCCGTAATACTGTCGGTAACTATGAGGCAGACTTTGTACAGTGTATCATAT
GGAAAAAGTCGGCTGAAAATACTGCTCAATATTGTAAAAAAGGAGCCATAATCGGCATAACTGGCAGAATACAAACAAGG
AGATACGAAAATCAGGAGGGTAAATATGTATATGTAACTGAAGTGGTCTCCGAGAGGGTTCAATTCATTGGAACTAAACA
AAATGATGGAAAGCCCAAGGATTTTGAACATATTGGTTTATAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.649

95

0.567
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.377

88.333

0.533
  ssb Latilactobacillus sakei subsp. sakei 23K

52.066

100

0.525
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.396

88.333

0.383
  ssbB/cilA Streptococcus mitis NCTC 12261

42.453

88.333

0.375
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.453

88.333

0.375
  ssbB/cilA Streptococcus mitis SK321

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae Rx1

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae D39

41.509

88.333

0.367
  ssbB/cilA Streptococcus pneumoniae R6

41.509

88.333

0.367
  ssbA Streptococcus mutans UA159

41.509

88.333

0.367