Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   GZH91_RS03360 Genome accession   NZ_AP021884
Coordinates   639474..640703 (+) Length   409 a.a.
NCBI ID   WP_147070780.1    Uniprot ID   A0A512L4Z7
Organism   Sulfuriferula plumbiphila strain Gro7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634474..645703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZH91_RS03345 (SFPGR_06660) - 635229..636062 (+) 834 WP_223264475.1 inner membrane protein YpjD -
  GZH91_RS03350 (SFPGR_06670) - 636133..637422 (+) 1290 WP_147070776.1 HlyC/CorC family transporter -
  GZH91_RS03355 (SFPGR_06680) pilB 637510..639225 (+) 1716 WP_147070778.1 type IV-A pilus assembly ATPase PilB Machinery gene
  GZH91_RS03360 (SFPGR_06690) pilC 639474..640703 (+) 1230 WP_147070780.1 type II secretion system F family protein Machinery gene
  GZH91_RS03365 (SFPGR_06700) pilD 640737..641606 (+) 870 WP_147070782.1 A24 family peptidase Machinery gene
  GZH91_RS03370 (SFPGR_06710) coaE 641609..642211 (+) 603 WP_147070784.1 dephospho-CoA kinase -
  GZH91_RS03375 (SFPGR_06720) zapD 642394..643146 (+) 753 WP_147070786.1 cell division protein ZapD -
  GZH91_RS03380 (SFPGR_06730) - 643300..643473 (+) 174 WP_147070787.1 Arm DNA-binding domain-containing protein -
  GZH91_RS03385 (SFPGR_06740) - 643508..643792 (+) 285 WP_147070789.1 helix-turn-helix domain-containing protein -
  GZH91_RS03390 (SFPGR_06750) tnpA 644302..644733 (-) 432 WP_147070791.1 IS200/IS605 family transposase -
  GZH91_RS03395 (SFPGR_06760) yacG 645125..645319 (+) 195 WP_147070793.1 DNA gyrase inhibitor YacG -

Sequence

Protein


Download         Length: 409 a.a.        Molecular weight: 44630.74 Da        Isoelectric Point: 10.2153

>NTDB_id=75259 GZH91_RS03360 WP_147070780.1 639474..640703(+) (pilC) [Sulfuriferula plumbiphila strain Gro7]
MAVARTTATLKKDIPFVWEGVDKKGKKVKGEMNAGGEAVVNATLRRQGITVTKVKKQSSFGRSKKITEKDVALFTRQLAT
MMKSGVPLLQSFDIVSRGHANPAVQKLLIDIKSNIETGSSMSQAFAKHPLYFDQLYINLVNAGEQAGILDSVLDRLATYK
EKILAIKGKIKSALFYPSAVLVVAFIITAVIMLFVIPAFKELFSSFGADLPAPTLVMMKISDIFVAYWWLIFGVIGGGFW
FFFYTWKRSRKMQAVMDRAMLKLPIFGPLIEKAAIARWTRTLSTMFAAGVPLVDALTSVAGAAGNHVFYEATQKIRAEVS
TGTSLTVAMQNSGIFPNMVQQMVSIGEESGALDSMLGKVADFFEREVDDAVDSLSSLMEPIIMVVLGTLIGGMVIAMYLP
IFKMGSVVG

Nucleotide


Download         Length: 1230 bp        

>NTDB_id=75259 GZH91_RS03360 WP_147070780.1 639474..640703(+) (pilC) [Sulfuriferula plumbiphila strain Gro7]
ATGGCAGTAGCAAGAACAACAGCAACGCTCAAAAAAGACATTCCGTTCGTGTGGGAGGGGGTGGACAAAAAAGGCAAAAA
AGTCAAAGGTGAGATGAACGCCGGCGGCGAGGCTGTGGTCAATGCAACCCTGCGCCGCCAGGGTATTACCGTCACCAAGG
TAAAAAAACAGAGCAGTTTCGGGCGCAGCAAGAAAATCACTGAAAAAGATGTGGCGCTGTTCACACGCCAGCTTGCCACG
ATGATGAAATCGGGCGTGCCGCTGCTGCAATCGTTTGATATTGTGTCGCGCGGGCATGCCAATCCTGCCGTGCAAAAGCT
CCTGATTGACATCAAAAGCAATATTGAAACCGGCAGCAGCATGAGCCAGGCATTTGCCAAACATCCCTTGTATTTTGACC
AGCTCTACATCAATCTGGTGAACGCGGGTGAACAGGCCGGCATTCTGGACAGCGTGCTCGACCGGTTGGCTACTTACAAG
GAAAAAATCCTCGCCATCAAAGGCAAGATCAAGTCTGCGTTGTTTTATCCGTCGGCTGTGCTGGTGGTGGCATTCATCAT
CACCGCAGTCATCATGCTGTTCGTGATTCCCGCGTTTAAAGAGCTGTTCAGCAGTTTTGGTGCCGACCTGCCGGCACCCA
CTCTGGTCATGATGAAAATATCCGATATTTTCGTGGCCTACTGGTGGTTGATATTTGGTGTGATAGGCGGCGGGTTCTGG
TTCTTCTTCTATACCTGGAAGCGTTCCAGAAAAATGCAGGCAGTGATGGATCGAGCCATGCTCAAACTACCCATTTTCGG
TCCGTTGATTGAGAAAGCAGCCATCGCGCGCTGGACGCGCACCCTGTCCACCATGTTCGCAGCGGGTGTGCCGCTGGTGG
ACGCATTGACTTCGGTTGCAGGCGCAGCGGGCAATCATGTGTTTTATGAAGCGACGCAAAAGATTCGGGCCGAAGTGAGC
ACCGGTACCAGCCTGACCGTGGCCATGCAGAACAGCGGCATTTTCCCCAACATGGTGCAGCAGATGGTGTCTATTGGCGA
AGAATCCGGCGCGCTCGATTCGATGCTGGGCAAGGTGGCAGATTTCTTCGAACGTGAGGTGGACGATGCGGTGGACTCCC
TCTCCAGCCTGATGGAGCCGATCATCATGGTGGTATTGGGCACGCTGATTGGCGGCATGGTAATTGCCATGTATTTGCCT
ATTTTCAAAATGGGCAGCGTGGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(278-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A512L4Z7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

55.025

97.311

0.535
  pilC Pseudomonas stutzeri DSM 10701

53.634

97.555

0.523
  pilC Acinetobacter baylyi ADP1

52.393

97.066

0.509
  pilC Acinetobacter baumannii D1279779

52.13

97.555

0.509
  pilG Neisseria gonorrhoeae MS11

50

98.289

0.491
  pilG Neisseria meningitidis 44/76-A

49.751

98.289

0.489
  pilC Vibrio cholerae strain A1552

40.806

97.066

0.396
  pilC Vibrio campbellii strain DS40M4

40.05

98.289

0.394
  pilC Thermus thermophilus HB27

35.904

100

0.364

Multiple sequence alignment