Detailed information NTG0075260

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GZH91_RS03365
• Genome accession: NZ_AP021884
• Coordinates: 640737..641606 (+)
• Length: 289 a.a.
• NCBI ID: WP_147070782.1
• Uniprot ID: -
• Organism: Sulfuriferula plumbiphila strain Gro7
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 635737..646606

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GZH91_RS03350 (SFPGR_06670)	-	636133..637422 (+)	1290	WP_147070776.1	HlyC/CorC family transporter	-
GZH91_RS03355 (SFPGR_06680)	pilB	637510..639225 (+)	1716	WP_147070778.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GZH91_RS03360 (SFPGR_06690)	pilC	639474..640703 (+)	1230	WP_147070780.1	type II secretion system F family protein	Machinery gene
GZH91_RS03365 (SFPGR_06700)	pilD	640737..641606 (+)	870	WP_147070782.1	A24 family peptidase	Machinery gene
GZH91_RS03370 (SFPGR_06710)	coaE	641609..642211 (+)	603	WP_147070784.1	dephospho-CoA kinase	-
GZH91_RS03375 (SFPGR_06720)	zapD	642394..643146 (+)	753	WP_147070786.1	cell division protein ZapD	-
GZH91_RS03380 (SFPGR_06730)	-	643300..643473 (+)	174	WP_147070787.1	Arm DNA-binding domain-containing protein	-
GZH91_RS03385 (SFPGR_06740)	-	643508..643792 (+)	285	WP_147070789.1	helix-turn-helix domain-containing protein	-
GZH91_RS03390 (SFPGR_06750)	tnpA	644302..644733 (-)	432	WP_147070791.1	IS200/IS605 family transposase	-
GZH91_RS03395 (SFPGR_06760)	yacG	645125..645319 (+)	195	WP_147070793.1	DNA gyrase inhibitor YacG	-
GZH91_RS03400 (SFPGR_06770)	rpiA	645316..645975 (-)	660	WP_174861822.1	ribose-5-phosphate isomerase RpiA	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 30998.13 Da
• Isoelectric Point: 7.2171

>NTDB_id=75260 GZH91_RS03365 WP_147070782.1 640737..641606(+) (pilD) [Sulfuriferula plumbiphila strain Gro7]
MSLSFTALLGAADPQLFAMLCGVLGLLVGSFLNVVIHRLPKIMERDWGVQCAALRGEDAPSAAAYNLMVPRSACPSCGHL
IGALENIPVLSYVWLRGKCAGCSAHISLRYPLVELLTGLLSAFAAWHFGFGWAAAGALLLVWALVALTFIDFDTQLLPDD
ITLPLLWLGLLFNLGSVFVPLDQAVVGAMMGYMVLWSIYWLFKLVTGKEGMGYGDFKLLAAIGAWLGWKMLPLVILLSSF
IGALVGIVLIVLAQRGRSVPIPFGPYLAGGGLVALFWGQPILQAYLAGF

Nucleotide

• Length: 870 bp

>NTDB_id=75260 GZH91_RS03365 WP_147070782.1 640737..641606(+) (pilD) [Sulfuriferula plumbiphila strain Gro7]
ATGTCCTTGTCCTTCACCGCGCTGCTGGGCGCTGCTGACCCGCAGCTGTTTGCCATGCTGTGTGGCGTACTCGGTCTGCT
GGTCGGCAGCTTTCTGAATGTCGTCATCCACCGCCTGCCAAAAATCATGGAGCGGGACTGGGGTGTCCAGTGTGCTGCGC
TGAGGGGAGAAGATGCGCCGTCGGCCGCCGCATACAATCTGATGGTACCGCGTTCTGCCTGCCCGAGTTGCGGCCACCTG
ATTGGCGCGCTGGAAAACATCCCGGTGCTGAGTTATGTCTGGCTGCGTGGCAAGTGCGCTGGCTGCAGCGCGCATATCAG
CCTGCGTTACCCGCTGGTGGAATTGCTTACCGGGCTGCTGTCCGCGTTTGCCGCCTGGCATTTCGGTTTTGGCTGGGCGG
CAGCGGGTGCTTTGCTGCTGGTATGGGCACTGGTCGCGCTGACCTTTATTGATTTCGATACTCAGCTCCTGCCGGACGAT
ATCACGCTGCCGCTGTTGTGGCTGGGGCTGCTGTTCAATCTCGGTAGTGTATTCGTGCCGCTGGACCAGGCGGTAGTCGG
GGCAATGATGGGCTATATGGTGCTATGGAGTATTTACTGGCTATTCAAGCTGGTCACCGGCAAAGAGGGCATGGGCTATG
GCGATTTCAAATTGCTCGCCGCCATCGGTGCCTGGCTGGGCTGGAAAATGCTGCCTCTGGTTATCCTGTTGTCATCCTTT
ATCGGAGCCCTTGTCGGCATTGTGCTGATCGTTCTGGCGCAGCGTGGGCGTTCGGTGCCGATTCCGTTCGGCCCTTATCT
GGCGGGCGGCGGACTGGTTGCCCTGTTTTGGGGGCAGCCCATCCTGCAGGCCTACCTGGCCGGGTTTTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-247)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-128)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.235	95.848	0.529
pilD	Vibrio campbellii strain DS40M4	52.518	96.194	0.505
pilD	Neisseria gonorrhoeae MS11	54.118	88.235	0.478
pilD	Acinetobacter baumannii D1279779	50.186	93.08	0.467
pilD	Acinetobacter nosocomialis M2	49.442	93.08	0.46