Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   SFSGTM_RS14165 Genome accession   NZ_AP021881
Coordinates   2889545..2890771 (+) Length   408 a.a.
NCBI ID   WP_162085732.1    Uniprot ID   -
Organism   Sulfuriferula nivalis strain SGTM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2884545..2895771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SFSGTM_RS14145 (SFSGTM_27380) - 2885742..2885972 (-) 231 WP_162085729.1 hypothetical protein -
  SFSGTM_RS14150 (SFSGTM_27390) - 2886020..2886325 (+) 306 WP_162085730.1 hypothetical protein -
  SFSGTM_RS14155 (SFSGTM_27400) - 2886432..2887703 (+) 1272 WP_174237423.1 CNNM domain-containing protein -
  SFSGTM_RS14160 (SFSGTM_27410) pilB 2887783..2889501 (+) 1719 WP_162085731.1 type IV-A pilus assembly ATPase PilB Machinery gene
  SFSGTM_RS14165 (SFSGTM_27420) pilC 2889545..2890771 (+) 1227 WP_162085732.1 type II secretion system F family protein Machinery gene
  SFSGTM_RS14170 (SFSGTM_27430) pilD 2890774..2891628 (+) 855 WP_162085733.1 A24 family peptidase Machinery gene
  SFSGTM_RS14175 (SFSGTM_27440) coaE 2891628..2892230 (+) 603 WP_162085734.1 dephospho-CoA kinase -
  SFSGTM_RS14180 (SFSGTM_27450) zapD 2892250..2893056 (+) 807 WP_269780061.1 cell division protein ZapD -
  SFSGTM_RS14185 yacG 2893053..2893235 (+) 183 WP_162085735.1 DNA gyrase inhibitor YacG -
  SFSGTM_RS14190 (SFSGTM_27460) rpiA 2893232..2893900 (-) 669 WP_162085736.1 ribose-5-phosphate isomerase RpiA -
  SFSGTM_RS14195 (SFSGTM_27470) ilvA 2894013..2895530 (+) 1518 WP_162086351.1 threonine ammonia-lyase, biosynthetic -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44336.43 Da        Isoelectric Point: 9.8630

>NTDB_id=75247 SFSGTM_RS14165 WP_162085732.1 2889545..2890771(+) (pilC) [Sulfuriferula nivalis strain SGTM]
MAVAKKTPTSKDVAYSWEGTDKSGKTVKGEMIAGGEAVVSSTLRRQGINVKRIKKKGNLAGSKKITAKDVALFTRQLATM
MKSGVPLLQAFDIVAKGHANPAVQKLLIDIKTDIEGGTSLSKSFAKHPLYFDTLYVNLVDAGEQAGILDGVLDRLATYQE
KIIAIKGKIKSALFYPLSIIVVAFVITAVIMLFVVPAFKELFSSFGADLPAPTLIMMSISDFFVQYWWLIFGSIGGGFWF
FFYTWKRSIKMQEIMDRAMLKMPIFGVILEKAAIARWTRTLSTMFAAGVPLVEALNSVAGAAGNIVFYHATMKIKAEVTT
GTNLTIAMQNTHLFPNMVQQMVQIGEESGALDSMLSKVADFYEAEVDDAVASISSLMEPVIMVILGGLIGSMVVAMYLPI
FKMGSVVG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=75247 SFSGTM_RS14165 WP_162085732.1 2889545..2890771(+) (pilC) [Sulfuriferula nivalis strain SGTM]
ATGGCTGTTGCAAAAAAAACACCCACAAGCAAAGATGTTGCTTATAGCTGGGAAGGAACTGACAAATCAGGCAAAACGGT
TAAAGGTGAGATGATAGCCGGCGGCGAGGCTGTGGTGAGCTCCACTTTGCGCCGCCAAGGTATTAATGTTAAAAGAATAA
AGAAAAAGGGTAACTTGGCAGGCAGTAAAAAAATCACAGCCAAAGATGTTGCCTTATTTACCCGCCAACTCGCAACCATG
ATGAAATCTGGCGTACCACTTTTACAAGCCTTTGACATTGTAGCTAAAGGGCATGCTAACCCTGCTGTACAGAAGTTATT
GATTGACATTAAAACGGATATAGAAGGCGGTACAAGTTTAAGTAAATCTTTCGCCAAACATCCACTTTACTTCGATACAC
TTTATGTCAATTTGGTTGATGCAGGTGAGCAAGCAGGTATTTTAGATGGCGTACTGGATCGCCTAGCGACTTATCAGGAA
AAAATAATTGCGATTAAAGGTAAAATTAAGTCCGCATTATTCTACCCACTTTCCATTATTGTCGTTGCATTTGTTATTAC
TGCGGTGATTATGCTTTTTGTCGTTCCCGCATTTAAGGAGTTATTCAGTAGCTTCGGTGCCGACTTACCCGCACCAACCC
TCATTATGATGAGCATTTCTGACTTCTTCGTTCAATATTGGTGGTTAATATTTGGCTCTATAGGCGGCGGATTCTGGTTC
TTTTTCTACACATGGAAACGGTCTATCAAAATGCAAGAAATCATGGATAGAGCAATGCTTAAAATGCCAATTTTTGGCGT
TATTTTAGAAAAAGCCGCCATCGCACGCTGGACACGCACACTCTCAACCATGTTTGCTGCTGGTGTGCCCCTAGTTGAAG
CATTAAATTCAGTCGCAGGCGCTGCTGGCAACATCGTTTTTTATCACGCAACCATGAAAATCAAAGCAGAAGTCACTACA
GGTACCAACCTCACAATTGCCATGCAGAATACTCATTTATTCCCTAACATGGTACAACAGATGGTACAGATAGGTGAAGA
ATCGGGTGCACTTGATTCTATGTTAAGCAAAGTTGCTGACTTTTATGAAGCTGAAGTAGATGATGCAGTTGCATCTATTT
CCAGCTTGATGGAACCTGTTATCATGGTCATACTTGGCGGTTTAATTGGCAGCATGGTGGTCGCGATGTACTTGCCAATT
TTCAAAATGGGCAGCGTGGTCGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(73-196)

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

56.281

97.549

0.549
  pilC Pseudomonas stutzeri DSM 10701

51.128

97.794

0.5
  pilC Acinetobacter baylyi ADP1

49.755

100

0.498
  pilC Acinetobacter baumannii D1279779

50.882

97.304

0.495
  pilG Neisseria gonorrhoeae MS11

49.626

98.284

0.488
  pilG Neisseria meningitidis 44/76-A

49.377

98.284

0.485
  pilC Vibrio cholerae strain A1552

40.704

97.549

0.397
  pilC Vibrio campbellii strain DS40M4

39.303

98.529

0.387
  pilC Thermus thermophilus HB27

39

98.039

0.382

Multiple sequence alignment