Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | SFSGTM_RS14170 | Genome accession | NZ_AP021881 |
| Coordinates | 2890774..2891628 (+) | Length | 284 a.a. |
| NCBI ID | WP_162085733.1 | Uniprot ID | A0A809RKP5 |
| Organism | Sulfuriferula nivalis strain SGTM | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2885774..2896628
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| SFSGTM_RS14150 (SFSGTM_27390) | - | 2886020..2886325 (+) | 306 | WP_162085730.1 | hypothetical protein | - |
| SFSGTM_RS14155 (SFSGTM_27400) | - | 2886432..2887703 (+) | 1272 | WP_174237423.1 | CNNM domain-containing protein | - |
| SFSGTM_RS14160 (SFSGTM_27410) | pilB | 2887783..2889501 (+) | 1719 | WP_162085731.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| SFSGTM_RS14165 (SFSGTM_27420) | pilC | 2889545..2890771 (+) | 1227 | WP_162085732.1 | type II secretion system F family protein | Machinery gene |
| SFSGTM_RS14170 (SFSGTM_27430) | pilD | 2890774..2891628 (+) | 855 | WP_162085733.1 | A24 family peptidase | Machinery gene |
| SFSGTM_RS14175 (SFSGTM_27440) | coaE | 2891628..2892230 (+) | 603 | WP_162085734.1 | dephospho-CoA kinase | - |
| SFSGTM_RS14180 (SFSGTM_27450) | zapD | 2892250..2893056 (+) | 807 | WP_269780061.1 | cell division protein ZapD | - |
| SFSGTM_RS14185 | yacG | 2893053..2893235 (+) | 183 | WP_162085735.1 | DNA gyrase inhibitor YacG | - |
| SFSGTM_RS14190 (SFSGTM_27460) | rpiA | 2893232..2893900 (-) | 669 | WP_162085736.1 | ribose-5-phosphate isomerase RpiA | - |
| SFSGTM_RS14195 (SFSGTM_27470) | ilvA | 2894013..2895530 (+) | 1518 | WP_162086351.1 | threonine ammonia-lyase, biosynthetic | - |
Sequence
Protein
Download Length: 284 a.a. Molecular weight: 30949.92 Da Isoelectric Point: 8.2109
>NTDB_id=75248 SFSGTM_RS14170 WP_162085733.1 2890774..2891628(+) (pilD) [Sulfuriferula nivalis strain SGTM]
MLTLLQTNPLWFTVTCGIIGLLVGSFLNVVIYRLPKIMENEWRVQCAELNQTSLPDQPPFSLSIPRSACPTCGHAITALE
NVPILSYLWLRGKCRGCQTRISVRYPVVEAITGILTAITAAYFGYGTASLAAIVFVWALIALTFIDFDTQLLPDNITLPL
LWLGLLANMQNTFTPLNSAVIGAMMGYLSLWSIYWLFKLITGKEGMGYGDFKLLAAIGAWLGWSMLPIVILLSSAVGAVV
GIILIVVAKQGRSIPIPFGPYLAGGGLIALFWGKEIMQSYLATL
MLTLLQTNPLWFTVTCGIIGLLVGSFLNVVIYRLPKIMENEWRVQCAELNQTSLPDQPPFSLSIPRSACPTCGHAITALE
NVPILSYLWLRGKCRGCQTRISVRYPVVEAITGILTAITAAYFGYGTASLAAIVFVWALIALTFIDFDTQLLPDNITLPL
LWLGLLANMQNTFTPLNSAVIGAMMGYLSLWSIYWLFKLITGKEGMGYGDFKLLAAIGAWLGWSMLPIVILLSSAVGAVV
GIILIVVAKQGRSIPIPFGPYLAGGGLIALFWGKEIMQSYLATL
Nucleotide
Download Length: 855 bp
>NTDB_id=75248 SFSGTM_RS14170 WP_162085733.1 2890774..2891628(+) (pilD) [Sulfuriferula nivalis strain SGTM]
ATGCTCACACTTCTGCAAACCAACCCCCTCTGGTTTACCGTTACTTGTGGCATTATCGGTTTACTGGTGGGGAGCTTCCT
CAACGTGGTAATTTATCGCTTGCCGAAGATAATGGAAAACGAATGGCGTGTTCAATGCGCGGAGTTGAATCAAACCAGCT
TGCCAGATCAGCCACCGTTTAGCCTGTCAATTCCACGCTCTGCGTGCCCTACATGTGGTCATGCCATCACCGCTTTAGAG
AACGTTCCCATACTAAGTTATTTATGGTTACGAGGAAAATGTCGTGGCTGCCAGACTCGCATTAGCGTACGTTACCCTGT
CGTGGAAGCCATCACTGGCATATTAACCGCAATCACCGCTGCCTACTTTGGCTATGGCACAGCCTCTCTAGCAGCCATTG
TATTTGTATGGGCACTCATTGCACTTACATTTATTGATTTTGATACTCAATTACTGCCTGACAACATTACCTTACCTTTA
CTTTGGCTAGGACTACTGGCCAATATGCAAAATACCTTTACCCCTTTAAATTCAGCTGTCATCGGTGCGATGATGGGCTA
TTTAAGCCTATGGTCTATTTATTGGTTATTCAAACTTATAACTGGAAAAGAAGGTATGGGTTATGGTGATTTTAAACTGC
TTGCTGCAATCGGTGCCTGGCTAGGCTGGTCCATGCTGCCTATAGTCATCCTGCTTTCTTCTGCAGTAGGCGCAGTGGTC
GGAATCATACTGATCGTCGTTGCTAAACAAGGACGCTCAATTCCCATACCATTCGGCCCTTATCTTGCAGGTGGTGGATT
AATTGCACTATTTTGGGGTAAGGAAATCATGCAAAGTTACCTCGCCACACTCTAA
ATGCTCACACTTCTGCAAACCAACCCCCTCTGGTTTACCGTTACTTGTGGCATTATCGGTTTACTGGTGGGGAGCTTCCT
CAACGTGGTAATTTATCGCTTGCCGAAGATAATGGAAAACGAATGGCGTGTTCAATGCGCGGAGTTGAATCAAACCAGCT
TGCCAGATCAGCCACCGTTTAGCCTGTCAATTCCACGCTCTGCGTGCCCTACATGTGGTCATGCCATCACCGCTTTAGAG
AACGTTCCCATACTAAGTTATTTATGGTTACGAGGAAAATGTCGTGGCTGCCAGACTCGCATTAGCGTACGTTACCCTGT
CGTGGAAGCCATCACTGGCATATTAACCGCAATCACCGCTGCCTACTTTGGCTATGGCACAGCCTCTCTAGCAGCCATTG
TATTTGTATGGGCACTCATTGCACTTACATTTATTGATTTTGATACTCAATTACTGCCTGACAACATTACCTTACCTTTA
CTTTGGCTAGGACTACTGGCCAATATGCAAAATACCTTTACCCCTTTAAATTCAGCTGTCATCGGTGCGATGATGGGCTA
TTTAAGCCTATGGTCTATTTATTGGTTATTCAAACTTATAACTGGAAAAGAAGGTATGGGTTATGGTGATTTTAAACTGC
TTGCTGCAATCGGTGCCTGGCTAGGCTGGTCCATGCTGCCTATAGTCATCCTGCTTTCTTCTGCAGTAGGCGCAGTGGTC
GGAATCATACTGATCGTCGTTGCTAAACAAGGACGCTCAATTCCCATACCATTCGGCCCTTATCTTGCAGGTGGTGGATT
AATTGCACTATTTTGGGGTAAGGAAATCATGCAAAGTTACCTCGCCACACTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.633 |
100 |
0.546 |
| pilD | Vibrio campbellii strain DS40M4 |
52.414 |
100 |
0.535 |
| pilD | Acinetobacter nosocomialis M2 |
50.185 |
95.423 |
0.479 |
| pilD | Acinetobacter baumannii D1279779 |
50.185 |
95.423 |
0.479 |
| pilD | Neisseria gonorrhoeae MS11 |
51.181 |
89.437 |
0.458 |