Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   OLW01_RS11715 Genome accession   NZ_CP109965
Coordinates   2678726..2679973 (+) Length   415 a.a.
NCBI ID   WP_326498582.1    Uniprot ID   -
Organism   Catenovulum adriaticum strain TS8     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2673726..2684973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLW01_RS11695 (OLW01_11695) - 2674048..2674677 (-) 630 WP_268074097.1 molybdenum cofactor guanylyltransferase -
  OLW01_RS11700 (OLW01_11700) moaA 2674678..2675652 (-) 975 WP_268074099.1 GTP 3',8-cyclase MoaA -
  OLW01_RS18430 - 2676158..2676577 (+) 420 WP_326498581.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OLW01_RS11710 (OLW01_11710) pilB 2676999..2678696 (+) 1698 WP_268074100.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OLW01_RS11715 (OLW01_11715) pilC 2678726..2679973 (+) 1248 WP_326498582.1 type II secretion system F family protein Machinery gene
  OLW01_RS11720 (OLW01_11720) pilD 2679973..2680905 (+) 933 WP_268074102.1 A24 family peptidase Machinery gene
  OLW01_RS11725 (OLW01_11725) coaE 2680902..2681501 (+) 600 WP_268074103.1 dephospho-CoA kinase -
  OLW01_RS11730 (OLW01_11730) zapD 2681589..2682335 (+) 747 WP_268074104.1 cell division protein ZapD -
  OLW01_RS11735 (OLW01_11735) yacG 2682395..2682619 (+) 225 WP_268074105.1 DNA gyrase inhibitor YacG -
  OLW01_RS11740 (OLW01_11740) ubiA 2682738..2683619 (-) 882 WP_268074106.1 4-hydroxybenzoate octaprenyltransferase -
  OLW01_RS11745 (OLW01_11745) - 2683612..2684151 (-) 540 WP_268074107.1 chorismate lyase -
  OLW01_RS11750 (OLW01_11750) - 2684323..2684712 (+) 390 WP_268074108.1 flagellar basal body-associated protein FliL -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45064.24 Da        Isoelectric Point: 10.2881

>NTDB_id=751351 OLW01_RS11715 WP_326498582.1 2678726..2679973(+) (pilC) [Catenovulum adriaticum strain TS8]
MMAIAKKKKKDAVVIQDFYVWRGVNRRGDKVNGESAADNLKHAKEQLKRQGINPTSVKKKPKPLFGRGPKKIVAKDIAVI
TRQLATMLGAGVPLVQSVELIGKGNENANIRRLLTTIGAGIQSGTPLNQVLREHPKYFDDLYCDLVKAGEQSGALEGIYD
RIATYKEKTEALKSKIKKAMTYPIAVVFIAVIVTLILLIFVVPQFEQIFASFGAELPVFTRLIINISNLIQTQGPIMALV
AGVGVFIFARAYKSSRKLRDKVDAILLKAPVFGGILNKAALARFSRTLATTFSAGVPLVEALDSAAGASGNAVYRKAIQY
IKSEVSAGMQINVAMRNTKLFPDMVIQMVQIGEESGAIDDMLNKVANIYEQEVDDAVDGLSALIEPMIMAVLGVVIGGLI
IAMYLPIFQMGKIVS

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=751351 OLW01_RS11715 WP_326498582.1 2678726..2679973(+) (pilC) [Catenovulum adriaticum strain TS8]
ATGATGGCAATAGCCAAGAAAAAAAAGAAAGATGCTGTCGTAATTCAAGATTTTTATGTGTGGCGAGGGGTAAACCGCCG
CGGTGATAAAGTTAATGGTGAATCTGCAGCCGACAACTTAAAACATGCCAAAGAGCAGCTTAAACGTCAGGGGATAAACC
CGACCAGTGTTAAAAAGAAACCCAAACCTTTGTTTGGTCGCGGCCCTAAAAAGATTGTTGCCAAAGATATTGCAGTAATA
ACCCGTCAACTTGCTACTATGTTAGGCGCAGGTGTGCCGTTAGTGCAATCAGTTGAATTAATAGGTAAAGGTAACGAAAA
CGCAAATATCAGACGCCTTTTAACCACAATTGGCGCTGGCATTCAATCGGGCACGCCATTAAATCAGGTACTGAGAGAAC
ACCCTAAATATTTTGATGACCTATATTGTGATTTAGTTAAAGCGGGCGAGCAGTCGGGTGCACTTGAAGGCATTTACGAT
CGCATTGCAACCTATAAAGAAAAAACCGAAGCGCTAAAATCAAAAATAAAAAAAGCCATGACCTACCCTATTGCGGTGGT
ATTTATCGCAGTTATCGTTACTTTAATTTTACTTATTTTTGTGGTGCCGCAATTTGAACAAATTTTTGCCAGTTTTGGGG
CAGAGTTACCTGTATTTACCCGCTTAATTATTAATATTTCTAACTTAATTCAAACGCAGGGCCCTATCATGGCATTAGTA
GCTGGGGTGGGTGTTTTTATTTTTGCACGTGCCTATAAAAGCTCACGAAAATTACGTGATAAAGTAGATGCTATATTATT
AAAAGCACCTGTTTTTGGTGGCATTTTAAATAAAGCAGCATTGGCTCGGTTTTCTCGTACTTTAGCGACTACATTTTCAG
CCGGTGTGCCTTTAGTTGAAGCGCTAGATTCAGCGGCTGGTGCCTCCGGCAACGCTGTTTACCGCAAAGCGATTCAGTAC
ATCAAATCAGAAGTATCTGCGGGGATGCAAATAAATGTTGCTATGCGCAATACTAAGTTGTTTCCTGATATGGTAATACA
AATGGTACAAATTGGCGAAGAGTCTGGCGCAATAGATGATATGCTCAACAAAGTCGCCAATATTTATGAACAAGAAGTAG
ATGATGCTGTTGACGGCTTGTCTGCGTTAATCGAGCCTATGATAATGGCGGTTTTAGGGGTAGTAATTGGTGGTTTAATT
ATTGCCATGTATTTACCTATCTTTCAAATGGGGAAAATTGTTAGCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(284-406)

Type II secretion system (T2SS), protein F (T2SSF)

(81-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.796

99.277

0.564
  pilC Legionella pneumophila strain ERS1305867

51.768

95.422

0.494
  pilC Acinetobacter baylyi ADP1

51.637

95.663

0.494
  pilC Acinetobacter baumannii D1279779

51.134

95.663

0.489
  pilG Neisseria gonorrhoeae MS11

43.029

100

0.431
  pilG Neisseria meningitidis 44/76-A

43.029

100

0.431
  pilC Vibrio cholerae strain A1552

43.687

95.422

0.417
  pilC Vibrio campbellii strain DS40M4

42.317

95.663

0.405
  pilC Thermus thermophilus HB27

39.651

96.627

0.383