Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   OLW01_RS11710 Genome accession   NZ_CP109965
Coordinates   2676999..2678696 (+) Length   565 a.a.
NCBI ID   WP_268074100.1    Uniprot ID   -
Organism   Catenovulum adriaticum strain TS8     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2671999..2683696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLW01_RS11680 (OLW01_11680) moaD 2672593..2672838 (-) 246 WP_268074092.1 molybdopterin converting factor subunit 1 -
  OLW01_RS11685 (OLW01_11685) moaC 2672855..2673358 (-) 504 WP_268074093.1 cyclic pyranopterin monophosphate synthase MoaC -
  OLW01_RS11690 (OLW01_11690) moaB 2673363..2673911 (-) 549 WP_268074095.1 molybdenum cofactor biosynthesis protein B -
  OLW01_RS11695 (OLW01_11695) - 2674048..2674677 (-) 630 WP_268074097.1 molybdenum cofactor guanylyltransferase -
  OLW01_RS11700 (OLW01_11700) moaA 2674678..2675652 (-) 975 WP_268074099.1 GTP 3',8-cyclase MoaA -
  OLW01_RS18430 - 2676158..2676577 (+) 420 WP_326498581.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  OLW01_RS11710 (OLW01_11710) pilB 2676999..2678696 (+) 1698 WP_268074100.1 type IV-A pilus assembly ATPase PilB Machinery gene
  OLW01_RS11715 (OLW01_11715) pilC 2678726..2679973 (+) 1248 WP_326498582.1 type II secretion system F family protein Machinery gene
  OLW01_RS11720 (OLW01_11720) pilD 2679973..2680905 (+) 933 WP_268074102.1 A24 family peptidase Machinery gene
  OLW01_RS11725 (OLW01_11725) coaE 2680902..2681501 (+) 600 WP_268074103.1 dephospho-CoA kinase -
  OLW01_RS11730 (OLW01_11730) zapD 2681589..2682335 (+) 747 WP_268074104.1 cell division protein ZapD -
  OLW01_RS11735 (OLW01_11735) yacG 2682395..2682619 (+) 225 WP_268074105.1 DNA gyrase inhibitor YacG -
  OLW01_RS11740 (OLW01_11740) ubiA 2682738..2683619 (-) 882 WP_268074106.1 4-hydroxybenzoate octaprenyltransferase -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 62644.61 Da        Isoelectric Point: 5.5258

>NTDB_id=751350 OLW01_RS11710 WP_268074100.1 2676999..2678696(+) (pilB) [Catenovulum adriaticum strain TS8]
MAAPDLRLYTNGLLNLHQQDDLKKQSFKSHLEVQQYIAKNNWFTEQEMLTEIAQRFHVPYLDLSFFDLACIPDDLLKERL
SDKHKVLPLFLRGRTLFLATTNPASMSAAEDFQFSSGFNVEYVCVEASKLQKAIDLKHEGDEAHLTLSDFDDSSLDNIEV
AEDATQDKEPDTPDKDDAPIVVYINRILLDAIKRGASDLHFEPYEHSYRIRFRIDGILHEVASPPVNLSTRMAARLKVMS
RLDIAEKRKPQDGRIKLKITTKKSIDFRVSTLPTLWGEKIVMRILDSSSAMLGIDALGYEPHQKQLYLNALAKPQGMILV
TGPTGSGKTVSLYTGLNILNTAERNISTAEDPVEINLEGINQVQINPKAGLDFSGALRSFLRQDPDIVMVGEIRDLDTAE
IAIKAAQTGHLVLSTLHTNSAAETLTRLLNMGVPSFNIASSVSLIIAQRLARRLCNQCKKPVEAPPPDNELLEFGFTPDQ
LNNLTLYEPVGCELCSGGFKGRIGIYEVMPISSEMANLIMQEGNALQIAKQAQTEKINNLRQSGIIKALAGTTSLGEVSR
VTSGN

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=751350 OLW01_RS11710 WP_268074100.1 2676999..2678696(+) (pilB) [Catenovulum adriaticum strain TS8]
ATGGCTGCACCTGATCTAAGACTCTACACTAACGGATTATTAAACTTACACCAGCAAGATGATTTAAAGAAGCAAAGCTT
TAAATCTCATCTTGAGGTTCAGCAATATATTGCCAAAAATAACTGGTTTACCGAGCAAGAAATGTTAACTGAAATCGCTC
AGCGTTTTCATGTTCCTTATCTAGATTTAAGCTTTTTTGATTTAGCTTGCATTCCCGATGATTTACTCAAAGAAAGGCTC
TCAGATAAACATAAAGTACTACCGCTATTTTTACGGGGTCGTACCCTATTTTTAGCAACGACAAATCCTGCTTCAATGAG
CGCCGCTGAAGATTTTCAATTTAGTTCAGGTTTTAACGTTGAATATGTTTGTGTTGAAGCAAGCAAGTTACAAAAAGCGA
TTGATTTAAAACACGAAGGTGACGAAGCCCATTTAACGTTGTCAGACTTTGACGACTCATCGCTAGACAATATAGAAGTG
GCAGAAGACGCCACTCAAGACAAAGAGCCAGACACCCCAGATAAAGACGATGCCCCTATTGTGGTGTACATTAATCGTAT
TTTATTAGATGCGATTAAACGCGGCGCATCTGATTTACATTTTGAACCTTACGAGCACAGCTACCGCATTCGCTTTAGAA
TCGACGGTATATTACACGAAGTCGCCTCACCACCCGTTAATTTGTCTACTCGAATGGCGGCACGCTTAAAAGTGATGTCT
CGGCTTGATATTGCAGAAAAACGCAAACCACAAGATGGCCGAATTAAGCTTAAAATTACCACCAAAAAATCAATCGATTT
TCGAGTATCAACGCTGCCAACCTTATGGGGCGAAAAAATTGTAATGCGGATACTCGACTCAAGCAGCGCTATGTTAGGCA
TAGATGCTTTGGGTTATGAACCGCATCAAAAGCAGCTTTATTTAAATGCCTTAGCCAAACCACAAGGTATGATTTTAGTC
ACTGGCCCTACCGGTAGCGGTAAAACTGTATCGCTTTATACTGGGTTAAATATTTTAAATACCGCTGAACGTAATATTTC
AACCGCAGAAGATCCGGTTGAAATCAACTTAGAAGGCATTAATCAAGTTCAGATTAACCCTAAAGCTGGATTAGACTTTT
CCGGCGCTTTACGCTCGTTTTTACGTCAAGATCCAGATATTGTCATGGTAGGTGAAATTCGAGATTTAGACACAGCCGAA
ATCGCAATTAAAGCAGCACAAACAGGTCATTTAGTTTTATCAACTTTACATACCAACTCTGCCGCCGAAACCTTAACTCG
TTTATTAAATATGGGCGTGCCCAGCTTTAATATTGCCAGCTCTGTTAGTTTAATTATTGCTCAGCGCTTAGCCCGCCGAT
TATGTAACCAATGTAAAAAACCAGTTGAAGCGCCGCCACCCGATAACGAGTTGCTTGAGTTTGGCTTTACCCCAGATCAG
TTAAACAATTTAACTTTATACGAGCCTGTGGGCTGTGAATTATGCTCAGGCGGATTTAAAGGCCGCATTGGTATTTATGA
AGTTATGCCTATTTCAAGCGAGATGGCAAATTTAATTATGCAAGAAGGGAACGCACTGCAAATTGCAAAACAAGCACAAA
CTGAAAAAATTAATAACCTGCGCCAATCTGGAATTATAAAAGCATTAGCAGGCACGACTAGTTTAGGCGAAGTAAGCCGG
GTAACTAGCGGCAATTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(186-453)

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(40-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baylyi ADP1

57.857

99.115

0.573
  pilB Legionella pneumophila strain ERS1305867

57.324

97.876

0.561
  pilB Acinetobacter baumannii D1279779

60.583

91.15

0.552
  pilB Vibrio cholerae strain A1552

52.228

99.292

0.519
  pilB Vibrio parahaemolyticus RIMD 2210633

51.499

100

0.517
  pilB Vibrio campbellii strain DS40M4

50.361

98.053

0.494
  pilF Neisseria gonorrhoeae MS11

49.009

98.23

0.481