Detailed information NTG0751352

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: OLW01_RS11720
• Genome accession: NZ_CP109965
• Coordinates: 2679973..2680905 (+)
• Length: 310 a.a.
• NCBI ID: WP_268074102.1
• Uniprot ID: -
• Organism: Catenovulum adriaticum strain TS8
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2674973..2685905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OLW01_RS18430	-	2676158..2676577 (+)	420	WP_326498581.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
OLW01_RS11710 (OLW01_11710)	pilB	2676999..2678696 (+)	1698	WP_268074100.1	type IV-A pilus assembly ATPase PilB	Machinery gene
OLW01_RS11715 (OLW01_11715)	pilC	2678726..2679973 (+)	1248	WP_326498582.1	type II secretion system F family protein	Machinery gene
OLW01_RS11720 (OLW01_11720)	pilD	2679973..2680905 (+)	933	WP_268074102.1	A24 family peptidase	Machinery gene
OLW01_RS11725 (OLW01_11725)	coaE	2680902..2681501 (+)	600	WP_268074103.1	dephospho-CoA kinase	-
OLW01_RS11730 (OLW01_11730)	zapD	2681589..2682335 (+)	747	WP_268074104.1	cell division protein ZapD	-
OLW01_RS11735 (OLW01_11735)	yacG	2682395..2682619 (+)	225	WP_268074105.1	DNA gyrase inhibitor YacG	-
OLW01_RS11740 (OLW01_11740)	ubiA	2682738..2683619 (-)	882	WP_268074106.1	4-hydroxybenzoate octaprenyltransferase	-
OLW01_RS11745 (OLW01_11745)	-	2683612..2684151 (-)	540	WP_268074107.1	chorismate lyase	-
OLW01_RS11750 (OLW01_11750)	-	2684323..2684712 (+)	390	WP_268074108.1	flagellar basal body-associated protein FliL	-
OLW01_RS11755 (OLW01_11755)	-	2684803..2685645 (-)	843	WP_268074109.1	rhomboid family intramembrane serine protease	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 34706.97 Da
• Isoelectric Point: 5.9773

>NTDB_id=751352 OLW01_RS11720 WP_268074102.1 2679973..2680905(+) (pilD) [Catenovulum adriaticum strain TS8]
MLFDNIIDVFQLYPLAWYGCAFLISLLIGSFLNVVIYRLPIMLERDWKAECEILLTEPLNSQKQDALAVQNLDESALNHQ
TSFNLVKPNSTCPHCQTAIKPWHNIPIFSWLALAGKCHSCKAPISIRYPLVELFTGLVGAYAAYHFGVSSLALWAMLFSF
ILICLCFIDLDTMLLPDQLTLSLIWLGLLANINGQFVDLKDAVIGAVAGYLVLWVVFQSFKLLTNKEGMGFGDFKLLAAL
GAWMGWQALPIVILLSSVVGAIIGISLIKFQNKDSQTAIPFGPYLAIAGFVAFYWRTEITQYYLQNWVYS

Nucleotide

• Length: 933 bp

>NTDB_id=751352 OLW01_RS11720 WP_268074102.1 2679973..2680905(+) (pilD) [Catenovulum adriaticum strain TS8]
ATGCTATTTGACAATATAATTGACGTTTTTCAACTTTATCCACTAGCTTGGTATGGCTGTGCTTTTCTGATTAGTTTATT
AATAGGTAGTTTTTTAAATGTTGTTATTTACCGACTCCCGATTATGCTTGAACGCGACTGGAAAGCAGAATGTGAAATCT
TATTAACTGAACCGCTCAACTCACAAAAGCAAGATGCGTTAGCCGTACAAAATTTAGATGAAAGCGCCCTAAATCACCAA
ACTAGTTTCAACTTGGTAAAACCCAATTCAACTTGTCCTCACTGCCAAACGGCCATTAAACCTTGGCATAATATCCCTAT
TTTTAGCTGGTTGGCATTAGCCGGAAAATGTCATTCATGCAAAGCACCTATTTCTATTCGCTACCCTTTGGTAGAGCTGT
TTACTGGCTTAGTAGGCGCTTATGCAGCATATCACTTTGGTGTTTCGAGTTTGGCGCTATGGGCAATGCTGTTTAGCTTT
ATTTTAATTTGTTTATGCTTTATTGATTTAGATACTATGTTGTTGCCCGATCAACTCACACTGAGTTTAATTTGGCTAGG
TTTACTGGCGAATATTAACGGCCAGTTTGTTGATTTAAAAGATGCTGTAATTGGTGCGGTGGCTGGCTATTTAGTGTTAT
GGGTGGTATTTCAAAGCTTTAAATTACTCACTAATAAAGAAGGTATGGGGTTTGGCGACTTTAAATTGTTAGCTGCGCTA
GGGGCGTGGATGGGTTGGCAAGCTTTGCCTATTGTCATTTTATTGTCGTCTGTTGTAGGTGCCATAATTGGAATTAGCTT
AATTAAATTTCAAAACAAAGACAGCCAAACTGCCATTCCATTTGGACCTTATTTAGCTATTGCTGGCTTTGTCGCTTTTT
ATTGGCGCACTGAAATTACTCAGTACTATTTACAAAACTGGGTTTATTCATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (156-265)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (23-146)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.825	97.742	0.497
pilD	Vibrio campbellii strain DS40M4	49.169	97.097	0.477
pilD	Acinetobacter nosocomialis M2	47.176	97.097	0.458
pilD	Acinetobacter baumannii D1279779	48.443	93.226	0.452
pilD	Neisseria gonorrhoeae MS11	47.619	88.065	0.419