Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OHM48_RS00805 Genome accession   NZ_CP109942
Coordinates   126263..126658 (+) Length   131 a.a.
NCBI ID   WP_105155768.1    Uniprot ID   -
Organism   Streptococcus suis strain ID35541     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 121263..131658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHM48_RS00775 (OHM48_00775) pepA 121877..122938 (-) 1062 WP_002936538.1 glutamyl aminopeptidase -
  OHM48_RS00780 (OHM48_00780) - 123151..123435 (+) 285 WP_002936537.1 DUF4651 domain-containing protein -
  OHM48_RS00785 (OHM48_00785) - 123432..123752 (+) 321 WP_002936536.1 thioredoxin family protein -
  OHM48_RS00790 (OHM48_00790) - 123797..124753 (+) 957 WP_002936535.1 DUF1002 domain-containing protein -
  OHM48_RS00795 (OHM48_00795) ytpR 124772..125395 (+) 624 WP_002936532.1 YtpR family tRNA-binding protein -
  OHM48_RS00800 (OHM48_00800) - 125429..126208 (-) 780 WP_002936525.1 DUF2785 domain-containing protein -
  OHM48_RS00805 (OHM48_00805) ssbA 126263..126658 (+) 396 WP_105155768.1 single-stranded DNA-binding protein Machinery gene
  OHM48_RS00810 (OHM48_00810) - 126777..127022 (-) 246 WP_014917177.1 hypothetical protein -
  OHM48_RS00815 (OHM48_00815) groES 127220..127501 (+) 282 WP_012774911.1 co-chaperone GroES -
  OHM48_RS00820 (OHM48_00820) groL 127512..129134 (+) 1623 WP_012774912.1 chaperonin GroEL -
  OHM48_RS00825 (OHM48_00825) rpsL 129366..129779 (+) 414 WP_002940030.1 30S ribosomal protein S12 -
  OHM48_RS00830 (OHM48_00830) rpsG 129796..130266 (+) 471 WP_002940031.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 14906.78 Da        Isoelectric Point: 5.0026

>NTDB_id=751080 OHM48_RS00805 WP_105155768.1 126263..126658(+) (ssbA) [Streptococcus suis strain ID35541]
MYNKVILIGRLTAQPELTQTPNGKNLTRVTVAVNRRFKTENGEREADFLNVIFWGKLAETLVSYGNKGSLISIDGELRTR
KYEKDGSNHYVTEILGQSFQLLESRAQRAMRENNTGDDLADLVLEEEELPF

Nucleotide


Download         Length: 396 bp        

>NTDB_id=751080 OHM48_RS00805 WP_105155768.1 126263..126658(+) (ssbA) [Streptococcus suis strain ID35541]
ATGTATAATAAAGTTATTTTAATCGGTCGCTTGACGGCCCAACCTGAACTCACTCAAACCCCTAACGGCAAAAATCTGAC
CCGTGTTACTGTCGCAGTCAACCGCCGTTTTAAGACGGAAAATGGCGAACGTGAAGCAGATTTTCTTAATGTCATTTTCT
GGGGCAAACTGGCGGAAACGCTTGTTTCCTATGGTAATAAAGGTAGTCTAATTTCCATTGATGGTGAATTGCGAACGCGA
AAATACGAAAAAGACGGCAGCAACCACTATGTGACAGAAATCTTAGGACAATCCTTCCAATTACTAGAAAGCCGTGCTCA
ACGTGCCATGCGTGAAAATAATACTGGTGATGACCTAGCTGACTTGGTCTTGGAAGAGGAGGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(3-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Streptococcus mutans UA159

76.336

100

0.763
  ssbB Streptococcus sobrinus strain NIDR 6715-7

76.336

100

0.763
  ssbB/cilA Streptococcus pneumoniae TIGR4

73.282

100

0.733
  ssbB/cilA Streptococcus pneumoniae R6

72.519

100

0.725
  ssbB/cilA Streptococcus mitis SK321

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae D39

72.519

100

0.725
  ssbB/cilA Streptococcus mitis NCTC 12261

72.519

100

0.725
  ssbB/cilA Streptococcus pneumoniae Rx1

72.519

100

0.725
  ssbB Lactococcus lactis subsp. cremoris KW2

64.286

85.496

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

45.133

86.26

0.389
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.113

80.916

0.389