Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OF158_RS08910 Genome accession   NZ_CP109616
Coordinates   1900276..1900668 (-) Length   130 a.a.
NCBI ID   WP_302469430.1    Uniprot ID   -
Organism   Weizmannia sp. WK01     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1872725..1919654 1900276..1900668 within 0


Gene organization within MGE regions


Location: 1872725..1919654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OF158_RS08715 (OF158_08715) - 1872725..1872958 (-) 234 WP_014098216.1 DUF896 domain-containing protein -
  OF158_RS08720 (OF158_08720) - 1873049..1873702 (-) 654 WP_014098215.1 recombinase family protein -
  OF158_RS08725 (OF158_08725) - 1873699..1874037 (-) 339 WP_014098214.1 LysM peptidoglycan-binding domain-containing protein -
  OF158_RS08730 (OF158_08730) lexA 1874244..1874864 (+) 621 WP_014098213.1 transcriptional repressor LexA -
  OF158_RS08735 (OF158_08735) - 1875314..1876030 (+) 717 WP_035184796.1 hypothetical protein -
  OF158_RS08740 (OF158_08740) - 1876135..1876974 (-) 840 WP_052042174.1 N-acetylmuramoyl-L-alanine amidase -
  OF158_RS08745 (OF158_08745) - 1877029..1877268 (-) 240 WP_172653413.1 phage holin -
  OF158_RS08750 (OF158_08750) - 1877280..1877555 (-) 276 WP_052042172.1 hemolysin XhlA family protein -
  OF158_RS08755 (OF158_08755) - 1877671..1877925 (-) 255 WP_035184794.1 hypothetical protein -
  OF158_RS08760 (OF158_08760) - 1877996..1878163 (-) 168 WP_164931350.1 hypothetical protein -
  OF158_RS08765 (OF158_08765) - 1878166..1878456 (-) 291 WP_035184791.1 hypothetical protein -
  OF158_RS08770 (OF158_08770) - 1878472..1879200 (-) 729 WP_035184789.1 hypothetical protein -
  OF158_RS08775 (OF158_08775) - 1879210..1880679 (-) 1470 WP_052042170.1 metallophosphoesterase -
  OF158_RS08780 (OF158_08780) - 1880679..1882085 (-) 1407 WP_052042168.1 phage tail protein -
  OF158_RS08785 (OF158_08785) - 1882094..1882918 (-) 825 WP_035184787.1 phage tail domain-containing protein -
  OF158_RS08790 (OF158_08790) - 1882926..1887104 (-) 4179 WP_052498231.1 phage tail tape measure protein -
  OF158_RS08795 (OF158_08795) - 1887273..1887599 (-) 327 WP_035184785.1 hypothetical protein -
  OF158_RS08800 (OF158_08800) - 1887653..1888261 (-) 609 WP_035184783.1 major tail protein -
  OF158_RS08805 (OF158_08805) - 1888274..1888660 (-) 387 WP_035184781.1 hypothetical protein -
  OF158_RS08810 (OF158_08810) - 1888657..1889088 (-) 432 WP_035184779.1 HK97-gp10 family putative phage morphogenesis protein -
  OF158_RS08815 (OF158_08815) - 1889088..1889420 (-) 333 WP_035184777.1 phage head closure protein -
  OF158_RS08820 (OF158_08820) - 1889423..1889707 (-) 285 WP_035184775.1 head-tail connector protein -
  OF158_RS08825 (OF158_08825) - 1889721..1890869 (-) 1149 WP_052042165.1 phage major capsid protein -
  OF158_RS08830 (OF158_08830) - 1890884..1891600 (-) 717 WP_035184773.1 head maturation protease, ClpP-related -
  OF158_RS08835 (OF158_08835) - 1891587..1892873 (-) 1287 WP_035184772.1 phage portal protein -
  OF158_RS08840 (OF158_08840) - 1892892..1894460 (-) 1569 WP_088775930.1 terminase large subunit -
  OF158_RS08845 (OF158_08845) - 1894450..1894986 (-) 537 WP_035184770.1 hypothetical protein -
  OF158_RS08850 (OF158_08850) - 1895094..1895465 (-) 372 WP_035184768.1 HNH endonuclease -
  OF158_RS08855 (OF158_08855) - 1895471..1895689 (-) 219 WP_035184766.1 hypothetical protein -
  OF158_RS08860 (OF158_08860) - 1896013..1896312 (-) 300 WP_035184764.1 hypothetical protein -
  OF158_RS08865 (OF158_08865) - 1896474..1897016 (-) 543 WP_035184762.1 site-specific integrase -
  OF158_RS08870 (OF158_08870) - 1897013..1897468 (-) 456 WP_035184760.1 ArpU family phage packaging/lysis transcriptional regulator -
  OF158_RS08875 (OF158_08875) - 1897571..1898257 (-) 687 WP_035184757.1 phage antirepressor KilAC domain-containing protein -
  OF158_RS08880 (OF158_08880) - 1898320..1898559 (-) 240 WP_035184755.1 hypothetical protein -
  OF158_RS08885 (OF158_08885) - 1898577..1898777 (-) 201 WP_035184753.1 hypothetical protein -
  OF158_RS08890 (OF158_08890) - 1898783..1899085 (-) 303 WP_035184750.1 hypothetical protein -
  OF158_RS08895 (OF158_08895) - 1899100..1899282 (-) 183 WP_035184748.1 hypothetical protein -
  OF158_RS08900 (OF158_08900) - 1899551..1899739 (-) 189 WP_035184746.1 BH0509 family protein -
  OF158_RS08905 (OF158_08905) - 1899872..1900081 (-) 210 WP_035184744.1 XtrA/YqaO family protein -
  OF158_RS08910 (OF158_08910) ssbA 1900276..1900668 (-) 393 WP_302469430.1 single-stranded DNA-binding protein Machinery gene
  OF158_RS08915 (OF158_08915) - 1900665..1901627 (-) 963 WP_035184743.1 DnaD domain-containing protein -
  OF158_RS08920 (OF158_08920) - 1901640..1902005 (-) 366 WP_035184742.1 hypothetical protein -
  OF158_RS08925 (OF158_08925) - 1902169..1902360 (-) 192 WP_035184741.1 hypothetical protein -
  OF158_RS08930 (OF158_08930) - 1902447..1902728 (-) 282 WP_043052499.1 YqaH family protein -
  OF158_RS08935 (OF158_08935) - 1902741..1903010 (-) 270 WP_035184739.1 group-specific protein -
  OF158_RS08940 (OF158_08940) - 1903035..1903556 (-) 522 WP_035184735.1 helix-turn-helix domain-containing protein -
  OF158_RS08945 (OF158_08945) - 1903845..1904072 (-) 228 WP_035184732.1 helix-turn-helix domain-containing protein -
  OF158_RS08950 (OF158_08950) - 1904218..1904637 (+) 420 WP_035184731.1 helix-turn-helix domain-containing protein -
  OF158_RS08955 (OF158_08955) - 1904766..1905683 (+) 918 WP_035184729.1 BRCT domain-containing protein -
  OF158_RS08960 (OF158_08960) - 1905713..1906675 (+) 963 WP_052042163.1 exonuclease domain-containing protein -
  OF158_RS08965 (OF158_08965) - 1906721..1908721 (+) 2001 WP_035184727.1 DEAD/DEAH box helicase -
  OF158_RS08970 (OF158_08970) - 1908725..1908991 (+) 267 WP_035184725.1 hypothetical protein -
  OF158_RS08975 (OF158_08975) - 1909087..1909605 (+) 519 WP_337680427.1 ImmA/IrrE family metallo-endopeptidase -
  OF158_RS08980 (OF158_08980) - 1909648..1910781 (+) 1134 WP_264302922.1 site-specific integrase -
  OF158_RS08985 (OF158_08985) glnA 1910890..1912227 (-) 1338 WP_014098212.1 type I glutamate--ammonia ligase -
  OF158_RS08990 (OF158_08990) - 1912297..1912686 (-) 390 WP_014098211.1 MerR family transcriptional regulator -
  OF158_RS08995 (OF158_08995) - 1912779..1916378 (-) 3600 WP_017550446.1 dynamin family protein -
  OF158_RS09000 (OF158_09000) - 1916544..1916747 (+) 204 WP_014098209.1 hypothetical protein -
  OF158_RS09005 (OF158_09005) - 1916872..1917710 (+) 839 Protein_1765 SPFH domain-containing protein -
  OF158_RS09010 (OF158_09010) - 1917757..1919070 (-) 1314 WP_014098207.1 nucleobase:cation symporter-2 family protein -
  OF158_RS09015 (OF158_09015) - 1919067..1919654 (-) 588 WP_014098206.1 xanthine phosphoribosyltransferase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14402.33 Da        Isoelectric Point: 7.9971

>NTDB_id=748567 OF158_RS08910 WP_302469430.1 1900276..1900668(-) (ssbA) [Weizmannia sp. WK01]
MINPVVLTGRLTADPVLRYTPSGVAVTTFTLAVNRTFSVQSGKKEADFVSVIAWRKIAENIANYLSKGNLIGVDGRLQTR
SYEDNNGKRVFVTEVVSEHVCFLETKKNRLANEPQGSQDLPPFSDDNLPF

Nucleotide


Download         Length: 393 bp        

>NTDB_id=748567 OF158_RS08910 WP_302469430.1 1900276..1900668(-) (ssbA) [Weizmannia sp. WK01]
ATGATAAATCCTGTGGTTTTAACCGGTAGGCTGACTGCAGATCCGGTCTTGCGTTATACACCAAGCGGCGTTGCTGTTAC
GACATTTACGCTTGCGGTGAACCGAACATTTTCCGTCCAGAGTGGCAAAAAGGAAGCGGACTTTGTCAGCGTGATTGCCT
GGCGGAAGATAGCTGAGAATATCGCAAATTATTTATCAAAAGGCAACCTGATCGGCGTGGACGGACGGCTGCAGACACGC
AGTTATGAAGACAATAATGGCAAGCGGGTATTCGTTACGGAAGTGGTCTCAGAACATGTGTGTTTTCTCGAAACAAAGAA
AAATAGGCTTGCAAATGAACCACAAGGAAGTCAGGATCTGCCGCCGTTTAGCGACGACAATTTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

67.925

81.538

0.554
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

81.538

0.485
  ssbA Streptococcus mutans UA159

46.212

100

0.469
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

81.538

0.462
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.182

100

0.438
  ssbB/cilA Streptococcus mitis NCTC 12261

42.424

100

0.431
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.424

100

0.431
  ssbB/cilA Streptococcus pneumoniae Rx1

41.667

100

0.423
  ssbB/cilA Streptococcus pneumoniae D39

41.667

100

0.423
  ssbB/cilA Streptococcus pneumoniae R6

41.667

100

0.423
  ssbB/cilA Streptococcus mitis SK321

41.667

100

0.423